Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01678 ATGGATTATGGAGGAAAGATTGGTGGAAGTGAAAGAGGTGGGCCTTGTGGTGCCTGCAAGTTTCTGAGGAGAAAGTGTGTCAAGGGCTGCATATTTGCACCATACTTTGACTCAGACCAAGGAACTGCACATTTTGCTGCAGTGCACAAGGTGTTTGGTGCAAGCAATGCCTCTAAGTTACTCATGAGAATCCCAGCACACAAACGTCTTGATGCAGTTGTTACTCTATGCTATGAGGCTTTGGCTAGGGCTAGAGACCCTGTTTATGGTTGTGTTGGTCACCTCTTTGCTCTTCAACAACAGCTTTTGGACAATTTTTCCATGGAAGCCATACACTACTTAATTAGAACGCCCCCTACAAGTGTCATGAACTTGCAGGCTGAGTTAACCTATGTCCAAGCCCGTCTTGCCACAATGCAGCGCATGCCAATGGCAGTAGCTCCTCTACCACATCCTCAAAGCTCTCCACCACCAACCCTTCCTTCCTCAGATAATATGCCATCAAACGCTGACATGCAAAGTGTTCCTATTATGCACTATGACCCTCTTCAACCACATTCAGCATCATTAGAGTTAAGCAGCATCCTTTTCAATCAATCAGACCAACAACTGGAGGATAGGGAACTCCAAGGTTTGGCTAGAGAATTTGTGACCAAATACTTGCCTGGAGTAAGATTCCAGCAGTCTAACTCTCCCTAA 699 0.4578 MDYGGKIGGSERGGPCGACKFLRRKCVKGCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQLLDNFSMEAIHYLIRTPPTSVMNLQAELTYVQARLATMQRMPMAVAPLPHPQSSPPPTLPSSDNMPSNADMQSVPIMHYDPLQPHSASLELSSILFNQSDQQLEDRELQGLAREFVTKYLPGVRFQQSNSP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01678 232 MobiDBLite consensus disorder prediction 149 163 - -
Spst4g01678 232 Pfam Lateral organ boundaries (LOB) domain 15 102 IPR004883 -
Spst4g01678 232 MobiDBLite consensus disorder prediction 148 168 - -
Spst4g01678 232 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 155 - -
Spst4g01678 232 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01678 Spst-Chr4 56505214 56509103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01678 13 230 AS2 family AT4G00210 49.576 1.35e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst4g01678 LOB 2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01678 - - gmx:100791377 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00957 1 11778933 11782240 Spst4g01678 4 56505214 56509103 PCT