Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01675 ATGGAAGCCAGAGAAGGAATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTGGCCCCGAGGAGTGAAGCTCCGAACCAGGTTCATGTCCCTGATGGTGGTGGTGGTGGTGGCGGAGGCGGCGGCGGAAGCAACGGAGGTGGCGGCGGCATTGGTGGTGCTGCAGCTATTGGTGTCTCTCCTGTGAGTGTGGGATTGGATGGAACAGCAAAGAAGAAACGGGGTAGACCAAGGAAATATGGGCCTGACGGGTCTGTCACCATGGCATTGTCACCAATGCCAATCTCGTCTTCTGCTCCTCATTCTAATGATTTTTCATCAGGCAAGCGGGGGAAAATGCGGGGTATGGAATATAAGCAGTCTAAAAAAATGGGTTTGGATTATATAGGTGACTTCAATGCATGCTCTGATGGTACAAATTTTATGCCACACATCATCACTGTCAATGCTGGTGAGGACATTACAATGAAGGTGATATCGTTTTCTCAACAAGGGCCAAGAGCTATATGTATCTTATCTGCTAATGGTGTAATTTCAAATGTTACTCTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGTTCAAGAAGCAGGTCTGGTGGAATGTCTGTTTCCTTGGCTAGCCCTGATGGCCGTGTTGTAGGTGGTGGAGTTGCTGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAAATAAAGAAGCCCAAGTCTACTGATTATGCAGCAGCAGCAGCAGCAGCTGCTGTTACTCCAGTTATTGCAGTGTCTTCTGCACCAGCACCACCACCTCCACCTTCAACCAATGCTGAAAAAGAGGATGTGAATATTAATGTGATGAGTGGAGCACATGTACTGCAAAATTCTGGAAGTCTTAACCCTAACCTCAGTCCTCCCAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCAAGAAAGTCAGCTACAGATATTAACATATCTTTGCCTGATTGTTAA 1110 0.473 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGGGGGGGGGSNGGGGGIGGAAAIGVSPVSVGLDGTAKKKRGRPRKYGPDGSVTMALSPMPISSSAPHSNDFSSGKRGKMRGMEYKQSKKMGLDYIGDFNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGSRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKIKKPKSTDYAAAAAAAAVTPVIAVSSAPAPPPPPSTNAEKEDVNINVMSGAHVLQNSGSLNPNLSPPNAFRRDNWVNMHSMPDSRKSATDINISLPDC 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01675 369 Gene3D - 149 280 - -
Spst4g01675 369 ProSiteProfiles PPC domain profile profile. 144 286 IPR005175 -
Spst4g01675 369 MobiDBLite consensus disorder prediction 30 52 - -
Spst4g01675 369 FunFam AT-hook motif nuclear-localized protein 1-like 149 280 - -
Spst4g01675 369 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 266 - -
Spst4g01675 369 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 330 IPR039605 GO:0003680
Spst4g01675 369 CDD DUF296 149 239 IPR005175 -
Spst4g01675 369 MobiDBLite consensus disorder prediction 72 92 - -
Spst4g01675 369 MobiDBLite consensus disorder prediction 98 117 - -
Spst4g01675 369 Pfam Plants and Prokaryotes Conserved (PCC) domain 149 262 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01675 Spst-Chr4 56473730 56477349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01675 10 289 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.483 2.68e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01675 - - gmx:100793726 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01675 4 56473730 56477349 Spst10g00318 10 3170002 3175688 ECH
Spst4g01675 4 56473730 56477349 Spst4g01675 4 56473730 56477349 ECH
Spst4g01675 4 56473730 56477349 Spst10g00318 10 3170002 3175688 PCT
Spst1g00955 1 11746157 11749384 Spst4g01675 4 56473730 56477349 PCT