Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01660 ATGAAGCTCGTTTGGTCCCCAGAAACCGTTCAATCATGTGAGAAATTCAAGGAATCGGGGGTACCCGAGTTGCTATCAGCCATGGCTGCAGGATTTAACACAAAGTTCATAGTGGAATCTTGGTGCTACGGTGGTCCTATAGCCGCAAGCGTAGGCTTAGCAGTTGCAGCTCGCAACACGGGTGCAAGACACGTGTGCATAGTCCCAGATGAACAGTCAAGGGTGCAGTACATAGAGGCCCTGGCAGAGATGGGGGTGTCTCCGCCGCCGGAGGTGGTGGACGGGGAGGCGGAGGTGGCGGTGTCACGGCTGGCGGGGCTGGACTTTCTGGTGGTGGATTGCAAGAGGAGGGAGTTCGCTAGGGTTCTGAGGGTGGCCAAAGTGAGTCCTAAAGGAGCAGTTCTGGCATGCAAGAATGCATGGCAGAGAAATTTCTGTGGCGGATTCAGATGGAGCGTGGTGCTACAAAGGGGTGTACGTACATGTGTTGTTCGCTGCAGGCGCAGTAGAAAGAGGAACAGAGGGTGTCGTTCTTCTTCAAACGCAGTCACCATGGGGCGTATGCACAGTCGAGGTAAGGGTATTTCCAGTTCGGCTCTTCCATACAAGAGGACGCCACCTAGCTGGTTGAAGATTTCGTCTCAGGATGTGGAGGAGAACATCTGCAAGTTTGCCAAGAAAGGTCTCACTCCATCTCAAATTGGTGTTATTCTTCGTGACTCTCATGGAATTGCACAGGTGAAGAGTGTCACTGGTAGCAAGATTCTCCGTATCTTGAAAGGCCATGGGCTTGCTCCTGAAATTCCTGAAGATTTGTATCACCTGATCAAGAAGGCTGTATCCATTAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGATTCAAAATTCAGGTTGATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTACAAGAAGACAAAGCAGCTTCCACCTGAACAAGAGGCTTTGCGTCAGAGTGGATGGGGAAGTGGAAGTATCTCAGATTATTGTAGATGGAATGGTATTGTGTGCAATGAAGCTCAAAATTATTTATTCCTTGGGCTCACCTACACGTTCAAATCGCGCGAGCCAAATGTCAACGCCCTCTCATATCTGACGCCTCTGTCTCAATCTCTTTGTATATATTCATCCTCTCGGCACCATTTTATCAACAAACACACACCTAACGCTGCCAAGTACGTCAAAGTGTACCTTTATTCTTCCTTCAATATCAAAATCCTGACCCAGAAACTAATCAAGATAACACACACCAAGAGAAAGAAGACACACATACACCATGAAGCTCGTTTGGTCCCCAGAAACCGTTCAATCAGTAAGCACCCTTTTCACCAAGATTCAAGAACCTGTGAGAAATTCAAGGAATCGGGGGTACCCGAGTTGCTATCAGCCATGGCTGCAGGATTTAACACAAAGTTCATAGTGGAATCTTGGTGCTACGGTGGTCCTATAGCCGCAAGCGTAGGCTTAGCAGTTGCAGCTCGCAACACGGGTGCAAGACACGTGTGCATAGTCCCAGATGAACAGTCAAGGGTGCAGTACATAGAGGCCCTGGCAGAGATGGGGGTGTCTCCGCCGCCGGAGGTGGTGGACGGGGAGGCGGAGGTGGCGGTGTCACGGCTGGCGGGGCTGGACTTTCTGGTGGTGGATTGCAAGAGGAGGGAGTTCGCTAGGGTTCTGAGGGTGGCCAAAGTGAGTCCTAAAGGAGCAGTTCTGGCATGCAAGAATGCATGGCAGAGAAATTTCTGTGGCGGATTCAGATGGAGCGTGGTGCTACAAAGGGGTGTACGTACATGTGGTTAG 1830 0.5038 MKLVWSPETVQSCEKFKESGVPELLSAMAAGFNTKFIVESWCYGGPIAASVGLAVAARNTGARHVCIVPDEQSRVQYIEALAEMGVSPPPEVVDGEAEVAVSRLAGLDFLVVDCKRREFARVLRVAKVSPKGAVLACKNAWQRNFCGGFRWSVVLQRGVRTCVVRCRRSRKRNRGCRSSSNAVTMGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKGHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKQLPPEQEALRQSGWGSGSISDYCRWNGIVCNEAQNYLFLGLTYTFKSREPNVNALSYLTPLSQSLCIYSSSRHHFINKHTPNAAKYVKVYLYSSFNIKILTQKLIKITHTKRKKTHIHHEARLVPRNRSISKHPFHQDSRTCEKFKESGVPELLSAMAAGFNTKFIVESWCYGGPIAASVGLAVAARNTGARHVCIVPDEQSRVQYIEALAEMGVSPPPEVVDGEAEVAVSRLAGLDFLVVDCKRREFARVLRVAKVSPKGAVLACKNAWQRNFCGGFRWSVVLQRGVRTCG 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01660 609 CDD Ribosomal_S15p_S13e 254 322 IPR000589 GO:0003735|GO:0005840|GO:0006412
Spst4g01660 609 Pfam Ribosomal protein S15 260 317 IPR000589 GO:0003735|GO:0005840|GO:0006412
Spst4g01660 609 FunFam 40S ribosomal protein S13 219 266 - -
Spst4g01660 609 Hamap 30S ribosomal protein S15 [rpsO]. 187 333 IPR023029 -
Spst4g01660 609 Gene3D Vaccinia Virus protein VP39 6 149 IPR029063 -
Spst4g01660 609 Gene3D Vaccinia Virus protein VP39 423 593 IPR029063 -
Spst4g01660 609 PANTHER DUF1442 FAMILY PROTEIN 8 179 IPR009902 -
Spst4g01660 609 SUPERFAMILY S15/NS1 RNA-binding domain 250 322 IPR009068 -
Spst4g01660 609 SMART Ribosomal_S13_N_2 185 244 IPR012606 GO:0003735|GO:0005840|GO:0006412
Spst4g01660 609 ProSitePatterns Ribosomal protein S15 signature. 282 312 IPR000589 GO:0003735|GO:0005840|GO:0006412
Spst4g01660 609 Gene3D - 219 266 - -
Spst4g01660 609 Gene3D - 267 326 - -
Spst4g01660 609 Pfam Ribosomal S13/S15 N-terminal domain 185 244 IPR012606 GO:0003735|GO:0005840|GO:0006412
Spst4g01660 609 Pfam Protein of unknown function (DUF1442) 455 605 IPR009902 -
Spst4g01660 609 Pfam Protein of unknown function (DUF1442) 1 164 IPR009902 -
Spst4g01660 609 FunFam 40S ribosomal protein S13 267 325 - -
Spst4g01660 609 SMART Ribosomal_S15_2 254 327 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01660 Spst-Chr4 56311148 56321739 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01660 185 321 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 91.971 6.08e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01660 K02953 - gmx:100791746 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01660 4 56311148 56321739 Spst4g01660 4 56311148 56321739 ECH