Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01658 ATGGCCGATCCAATTTACCCTAGTTTTCTCTACCTTCATATTCTCAGGGTTTCTCTTCCATCTCTTCTAGTTGTTCGCTGCAGGCGCAGTAGAAAGAGGAACAGAGGGTGTCGTTCTTCTTCAAACGCAGTCACCATGGGGCGTATGCACAGTCGAGGTAAGGGTATTTCCAGTTCGGCTCTTCCATACAAGAGGACGCCACCTAGCTGGTTGAAGATTTCGTCTCAGGATGTGGAGGAGAACATCTGCAAGTTTGCCAAGAAAGGTCTCACTCCATCTCAAATTGGTGTTATTCTTCGTGACTCTCATGGAATTGCACAAGTGAAGAGTGTCACTGTTAGCAAGATTCTCCGTATCTTGAAAGGCCATGGGCTTGCTCCTGAAATTCCTGAAGATTTGTATCACCTGATCAAGAAGGCTGTATCCATTAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGATTCAAAATTCAGGTTGATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTACAAGAAGACAAAGCAGCTTCCACCTGTGTGGAAATATGAATCATCAACAGCCAGCACCCTTGTGGCTTAG 591 0.4602 MADPIYPSFLYLHILRVSLPSLLVVRCRRSRKRNRGCRSSSNAVTMGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTVSKILRILKGHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKQLPPVWKYESSTASTLVA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01658 196 Gene3D - 80 127 - -
Spst4g01658 196 SUPERFAMILY S15/NS1 RNA-binding domain 111 187 IPR009068 -
Spst4g01658 196 FunFam 40S ribosomal protein S13 80 127 - -
Spst4g01658 196 ProSitePatterns Ribosomal protein S15 signature. 143 173 IPR000589 GO:0003735|GO:0005840|GO:0006412
Spst4g01658 196 FunFam 40S ribosomal protein S13 128 196 - -
Spst4g01658 196 Gene3D - 128 196 - -
Spst4g01658 196 CDD Ribosomal_S15p_S13e 115 190 IPR000589 GO:0003735|GO:0005840|GO:0006412
Spst4g01658 196 SMART Ribosomal_S15_2 115 194 IPR000589 GO:0003735|GO:0005840|GO:0006412
Spst4g01658 196 Pfam Ribosomal protein S15 120 190 IPR000589 GO:0003735|GO:0005840|GO:0006412
Spst4g01658 196 Hamap 30S ribosomal protein S15 [rpsO]. 48 194 IPR023029 -
Spst4g01658 196 SMART Ribosomal_S13_N_2 46 105 IPR012606 GO:0003735|GO:0005840|GO:0006412
Spst4g01658 196 Pfam Ribosomal S13/S15 N-terminal domain 46 105 IPR012606 GO:0003735|GO:0005840|GO:0006412
Spst4g01658 196 PANTHER RIBOSOMAL PROTEIN S15P/S13E 46 196 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01658 Spst-Chr4 56273702 56275724 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01658 46 196 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 91.391 1.34e-99 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01658 K02953 - sspl:121784637 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01658 4 56273702 56275724 Spst4g01658 4 56273702 56275724 ECH