Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01656 ATGGAAAACTCTTACAAGGTGGATCTAGTATTTTTTACCTTCTTTTATGCCATGTTCCTACAAGGTGTTATTGCTAACACTATTGCAGCTTCCAATTGCTCATCAATTAATGAGGAACAAGAGGCTTTGCGTCAGAGTGGATGGGGAAGTGGAAGTATCTCAGATTATTGTAGATGGAATGGTATTGTGTGCAATGAAGCTCAAAGTGTCACAGAGATTTCAACTAAGAAATATTTTTATATTCCTTTAGAAGCTCATATTCAGCATTTCAATGTGGTTGCATTCCCTAATTTAATCCGTCTAGAGCTTAGTGGGTTGAGACTTAAAGGAAATATTCCATCAGAAATTAGCTCTCTTAGAAAGCTTCTTCATCTTGATCTCTCCTCTAATTGTCTTCAAGGTGAGTTGCCTAGTTCTCTTTCAAGTCTCGCTCAACTTGAGACACTTAATATTTCTAACAATTTTCTTACTGGTGTGATCCCTTCTACTTTGGGCCAATTGAAGAATTTGACCCTACTTTCCCTTGACTCAAACCAAATTCAAGCACACATTCCTGCAGAACTAGGGAATTTAAGAGGATTGGAGCAGTTAACTCTTTCAAAAAACTCACTCAATGGCTCAATCCCTTCTACTTTAGAGCACTTGATCCATCTCAAAGTTTTGGATCTTTCTTATAATAAGATTTTTGGTGTTATACCAGATGGGATATTTGCACTGACACAACTAACTAGAGTTAAATTATCTTGGAATCAAATAACTGGTTCCATTCCATCTAGGATTGGCAAAATCTTAAGACTTGAAATTTTAGATCTTTCCAACAATCATCTTGAGGGACCTATCCCAGATGATGTTCTGAACCATTGTGGGAATTTGCAGCTAAGCAACAACTCTTTAAATGGGAGCATTCCTTCTCAAATAGGCAATATTTCATATCTAGATCTTAGTTACAATAACCTTACAGGCAACATACCTGCAGGCCTTTATTCTGTTTCTCACCTTAATTTATCATACAATTCCTTCAATGTTTCAGATCACAGTTTTTGTGGTTTACCACAAGACTCTTTAATTGGTAATAAGGATATGAACAATTCGTGCTCTTCTGATGCTCAGATTTCTGATACTCATATGTCTCTAGTAATGATAATTGTCTTTTCTACCTTCAATGGCATGGTTTTTTCAATGGTCCTTGTCTGTTGGGGAATTCACGTTTTCTGTCCCCTCCCTAATGAGTTTGGAATTGAGCAAAGAAGGAAGAATGGAGACATGCTTTCAATTTGGAACTATGATGGTAAGATTGCATTTGAAGACATAATTAAGGCCACAGAAGACTTTGATATAAAGTATTGCATAGGAACAGGTGCTTATGGAAGTGTGTACAAGGCACAACTTCCCAGTGGCAGAATTGTTGCACTGAAAAAGCTTCACAAAGCAGAATCTGAAAATCCATCCTTTTACAAGAGCTTTTGCAACGAGACCAAGATCTTGACAGAAATTCGCCATCGTAATATCATTAAGCTTTATGGCTTTTGTTTGCATAACAAGTGTATGTTTTTGGTGTATGAGTATATGGAAAGGGGAAGCTTGTTTTGCAACTTGTCTTATGATGTGGAAGCTCAAGAGCTGAATTGGAGAAAGAGGATAAATATTGTTAAAGGGATAGCCTATGGCTTGGCTCACATGCACCATGATTGTACTCCACCCATTGTTCATCGAGACATAAACAGTAACAACATTTTGTTAAACTCAGAGTTACAAGCTTTCATCTCAGACTTTGGCACTGCAAGACTTCTTGATTGTCATTCATCAAATCAAACTCTTCTTGCTGGAACTTATGGATATGTTGCTCCAGAACTGGCTTACACCTTGACCGTGACTACCAAATGTGATGTGTATAGCTTTGGAGTAGTGGTTCTGGAAACAATGATGGGTAGACATCCAACTGAAGTGATTTCTTCTTTATCAGAACCATCCATTCAGAACAAGAAGTTGAAAGATCTATTGGACTCACGTATTTCACTACCATTTTTTCGAAAAGATATGCAAGATATTGTGCTTGTTGTAACATTAGCATTAGCATGTTTGTGCCCCCACCCAAAATCCAGACCATCCATGCAGGAAATAGCTAATGAGCTTTTAGTTTCGAAGCCAACATTGCTTTCGTATTTTGATGGCATTTCCATCCATCAACTCATGAAGCAAAAACTTATATATAATAGATAG 2220 0.3725 MENSYKVDLVFFTFFYAMFLQGVIANTIAASNCSSINEEQEALRQSGWGSGSISDYCRWNGIVCNEAQSVTEISTKKYFYIPLEAHIQHFNVVAFPNLIRLELSGLRLKGNIPSEISSLRKLLHLDLSSNCLQGELPSSLSSLAQLETLNISNNFLTGVIPSTLGQLKNLTLLSLDSNQIQAHIPAELGNLRGLEQLTLSKNSLNGSIPSTLEHLIHLKVLDLSYNKIFGVIPDGIFALTQLTRVKLSWNQITGSIPSRIGKILRLEILDLSNNHLEGPIPDDVLNHCGNLQLSNNSLNGSIPSQIGNISYLDLSYNNLTGNIPAGLYSVSHLNLSYNSFNVSDHSFCGLPQDSLIGNKDMNNSCSSDAQISDTHMSLVMIIVFSTFNGMVFSMVLVCWGIHVFCPLPNEFGIEQRRKNGDMLSIWNYDGKIAFEDIIKATEDFDIKYCIGTGAYGSVYKAQLPSGRIVALKKLHKAESENPSFYKSFCNETKILTEIRHRNIIKLYGFCLHNKCMFLVYEYMERGSLFCNLSYDVEAQELNWRKRINIVKGIAYGLAHMHHDCTPPIVHRDINSNNILLNSELQAFISDFGTARLLDCHSSNQTLLAGTYGYVAPELAYTLTVTTKCDVYSFGVVVLETMMGRHPTEVISSLSEPSIQNKKLKDLLDSRISLPFFRKDMQDIVLVVTLALACLCPHPKSRPSMQEIANELLVSKPTLLSYFDGISIHQLMKQKLIYNR 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01656 739 SUPERFAMILY L domain-like 50 291 - -
Spst4g01656 739 FunFam Leucine-rich repeat receptor protein kinase MSP1 409 522 - -
Spst4g01656 739 Pfam Protein kinase domain 448 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01656 739 Gene3D Ribonuclease Inhibitor 31 183 IPR032675 -
Spst4g01656 739 Gene3D Ribonuclease Inhibitor 287 369 IPR032675 -
Spst4g01656 739 ProSitePatterns Protein kinases ATP-binding region signature. 450 472 IPR017441 GO:0005524
Spst4g01656 739 SUPERFAMILY Protein kinase-like (PK-like) 426 712 IPR011009 -
Spst4g01656 739 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 212 302 - -
Spst4g01656 739 FunFam Nuclear pore complex protein NUP107 27 186 - -
Spst4g01656 739 PANTHER LEUCINE RICH REPEAT KINASE 2 218 717 - -
Spst4g01656 739 Gene3D Ribonuclease Inhibitor 184 286 IPR032675 -
Spst4g01656 739 Pfam Leucine rich repeat 145 204 IPR001611 GO:0005515
Spst4g01656 739 SMART LRR_typ_2 263 287 IPR003591 -
Spst4g01656 739 SMART LRR_typ_2 215 239 IPR003591 -
Spst4g01656 739 SMART LRR_typ_2 167 191 IPR003591 -
Spst4g01656 739 SMART LRR_typ_2 327 350 IPR003591 -
Spst4g01656 739 SMART LRR_typ_2 143 166 IPR003591 -
Spst4g01656 739 SMART LRR_typ_2 119 142 IPR003591 -
Spst4g01656 739 ProSiteProfiles Protein kinase domain profile. 444 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01656 739 Gene3D Phosphorylase Kinase; domain 1 412 522 - -
Spst4g01656 739 Gene3D Transferase(Phosphotransferase) domain 1 523 717 - -
Spst4g01656 739 FunFam MDIS1-interacting receptor like kinase 2 523 717 - -
Spst4g01656 739 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515
Spst4g01656 739 Pfam Leucine Rich repeat 215 228 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01656 Spst-Chr4 56252229 56254780 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01656 98 616 Receptor kinase-like Gene Family AT4G08850 39.560 1.54e-112 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst4g01656 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01656 - - vun:114165534 1189.48