Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01652 ATGTTGTTGTATATGATGTTGCAGGTACCATCTGTGATTGGTGGCAGCATAAATCAGGAACGACAGGCTTTGGTCCGCAGTGGTTGGTGGAATGATTACCTAAATATCTCACACTATTGTCAATGGGATGGAATCTATTGTGGTGAACCTGAAAGTGTTACTCGGATTTACGGTTGGATTTTGAAGATTCCTAAAGAATTTTTGCGGATTCAGAACTTGAACGTGACTGCCTTACCCCATTTAGAATCTTTATTTCTCGAAGGAATGGGTCTTACGGGAAGCATCCCCACGGAAATAGGCACACTTACAAACCTAACCGATCTTGATCTATCCAACAATAGTCTCCAAGGTCAGTTGTTGGTGCACACACTTTTAGAACTTGCTATTCTCTTGATTCTAAATTCTATCAATGGAAGAATTTACCCTTCTCTTTCGTGGTTTAACCCAATTGCAGGTTTTATTCCACCGCACCTTGGTAATTTGACACAATTGGAGGTGTTAGGTCTCTCTAACAATTTGCTAACAGGTTCAATCCCGACTACATTGGGTCAAATGAAGAATTTGAAAGCTCTCGTTCTTGATTCGAATAAATTTGAACGTCCAATACCACCACATCTTGGAAATTTGACACAACTGGAAACGTTATGTATTCCTAAGACCAAATGTGAATCAATATCAACAAAGAATGGAGACTTGTTTTCTATATGGAACTATGATGGTAAAATTGCATTTGAGGATATCATTGAAGCAACTGAAGACTTTGACTTCAAGTACTGTATTGGAACAGGCACATATGGCAGTGTGTACAAAGCACAACTGCCTAGTGGCAACATTGTAGCCTTAAAAAAACTCCACCGAAAGGAATCTGAAAATCCATCTTTTGACAAAAGTTTTCGCAACGAGGTCAAGATGTTAACAGAAATTCGTCATAAAAACATTGTAAAGCTCCATGGCTTTTGCCTCCACAATCGGTGCATGTTTTTAGTCTATCAATACATGGAAAGAGGTAGTTTATTTTATATTTTGAACGATGATGTGGAAGCTAAGGAGTTGAATTGGAGTAAGAGGGTGAATGTCATTAAAGGAATTGCACTTGCTTTATCCTACATGCATCATGGTTGTACGCCGCCAATTGTTCATCGGGATGTAACAAGTAACAATGTTCTTTTAAACGCACAATTAGAGGCTTATGTCTCAGACTTTGGCACTGCTCGACTCCTTGATCCTGATTCTTCAAATCAAACCTTGGCAGTTGGAACTTATGGCTACATTGCCCCAGAGCTTGCCTATACACTGACTGTGACAGAAAAATGTGATGTCTATAGTTTTGGAGTGGTGGCTCTAGAAGCATTAATGGGAAGACATCCAGGAGAGCTGATCTCATCTTTATCAGACCCAACCACTCAAACTATGTTGATGAGAGATCTTTTGGATCCACGTCTTTGTCTTCCTCTTGGGAAAGACATTCAAGATATAACTCTTGTGGATATCATTGAAGCAACTGAAGACTTTGACCTTAAGCACTGTACTGGAATAGGTGGATATGAAAGTGTGTATAAAGCACAACTGCCCAGTGGCAACATTACTAAAAGATATGTACCAGAGTCCACTCCATATGCTTATGACAGTATGGGAAAGTGTGTTTGGAGTTTAGTAATGATGGGGTTGTATATGATGGTGCAGGTACCATCTGTGATTGGTGGCTGCATAAAACAAGAACGACAAGCTCTGCTCCACAGCGGTTGGTGGCATGATGACTCAAATATCTCAGACCATTGTCATTGGGATGGTATCTCTTGTGATGAAGCTGGAAGTGTTACTCGGATTTACGGTTGGTTGTTGAAGATTCCTCAATCAAAAGAATTGTTGCGGATTCAGAACTTGAACGTGACTTCCTTCCACAGAAATAAGCAAACTTACAAACCTCACCTATCTTGA 1938 0.3999 MLLYMMLQVPSVIGGSINQERQALVRSGWWNDYLNISHYCQWDGIYCGEPESVTRIYGWILKIPKEFLRIQNLNVTALPHLESLFLEGMGLTGSIPTEIGTLTNLTDLDLSNNSLQGQLLVHTLLELAILLILNSINGRIYPSLSWFNPIAGFIPPHLGNLTQLEVLGLSNNLLTGSIPTTLGQMKNLKALVLDSNKFERPIPPHLGNLTQLETLCIPKTKCESISTKNGDLFSIWNYDGKIAFEDIIEATEDFDFKYCIGTGTYGSVYKAQLPSGNIVALKKLHRKESENPSFDKSFRNEVKMLTEIRHKNIVKLHGFCLHNRCMFLVYQYMERGSLFYILNDDVEAKELNWSKRVNVIKGIALALSYMHHGCTPPIVHRDVTSNNVLLNAQLEAYVSDFGTARLLDPDSSNQTLAVGTYGYIAPELAYTLTVTEKCDVYSFGVVALEALMGRHPGELISSLSDPTTQTMLMRDLLDPRLCLPLGKDIQDITLVDIIEATEDFDLKHCTGIGGYESVYKAQLPSGNITKRYVPESTPYAYDSMGKCVWSLVMMGLYMMVQVPSVIGGCIKQERQALLHSGWWHDDSNISDHCHWDGISCDEAGSVTRIYGWLLKIPQSKELLRIQNLNVTSFHRNKQTYKPHLS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01652 645 FunFam Leucine-rich repeat receptor protein kinase MSP1 218 332 - -
Spst4g01652 645 PANTHER LEUCINE RICH REPEAT KINASE 2 62 488 - -
Spst4g01652 645 ProSitePatterns Tyrosine protein kinases specific active-site signature. 378 390 IPR008266 GO:0004672|GO:0006468
Spst4g01652 645 Pfam Protein kinase domain 259 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01652 645 SUPERFAMILY L domain-like 69 225 - -
Spst4g01652 645 Gene3D Ribonuclease Inhibitor 15 144 IPR032675 -
Spst4g01652 645 SUPERFAMILY Protein kinase-like (PK-like) 239 462 IPR011009 -
Spst4g01652 645 PRINTS Leucine-rich repeat signature 105 118 - -
Spst4g01652 645 PRINTS Leucine-rich repeat signature 161 174 - -
Spst4g01652 645 ProSiteProfiles Protein kinase domain profile. 254 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01652 645 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 143 224 - -
Spst4g01652 645 Gene3D Ribonuclease Inhibitor 145 241 IPR032675 -
Spst4g01652 645 ProSitePatterns Protein kinases ATP-binding region signature. 260 282 IPR017441 GO:0005524
Spst4g01652 645 Gene3D Transferase(Phosphotransferase) domain 1 242 482 - -
Spst4g01652 645 Gene3D Phosphorylase Kinase; domain 1 483 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01652 Spst-Chr4 56189701 56199607 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01652 75 426 Receptor kinase-like Gene Family AT4G08850 39.302 5.34e-75 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst4g01652 Pkinase 7.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01652 - - vun:114166569 491.5