Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01631 ATGAAATCTTCTCGCGTCCTCCTACCACTCTTCATTCCTTTCCTACTATCCTCTTTCGTTTCATCTTATTCTTCTAATGACGTTCAACTTTGGTGCAACCAAACTCCGAACCCTCAACCATGTCAGTATTTCTTCACCAATAACCCCACTTATCAATACCAACCCATCAAGCAAAAATCTGATTTCTTCAAGCTTTCACTGCAACTTGCTCAACAACGTGCTCTAAATGCCCATGTAAGCACCCTCTCACTTGGTTCAAAGTGCAGAAACCCTCGTGAAAAAGCCGCTTGGGCTGATTGTGTTCAGCTTTATGAGCAAACCATTCGTAAACTCAACCAAACCTTAGACCCTAACACCAAGTGTTCCCAACTTGATACTCAAACATGGCTCAGCACAGCTCTCACCAACCTTGAGACATGCAAAGCTGGGTTCTACGACCTTGGCGTTCAGGACTATCTTCTGCCTTTCATGTCCAACAATGTTTCCCAGTTGTTGAGCAACACTTTGGCACTAAACAAAGTTCAATATGAAGAATCAAATTACAAAGATGGGTTTCCCGCATGGGTGAAGCCAGGTGATAGGAAGTTGTTGCAAGCTTCATCTCCAGCTTCTAACGCCAACGTAGTGGTGGCAAAAGATGGGTCTGGAAAGTACACGACGGTTAGTGCAGCCATAAATGCTGCACCAAAGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGGTGGTGTATACAATGAACAAGTTGAGATAAAAGCAAATAATATAATGTTGGTGGGGGATGGTATTGGAAAGACCATAATCACAGGTAGCAAAAGTGTTGGAGGGGGCACCACAACCTTTAGTTCAGCCACTGTTGCTGTTGTTGGAGATGGATTTATAGCACAAGACATCACGTTTAGAAACACTGCTGGTGCAGCAAACCACCAAGCCGTTGCATTGCGTTCTGGATCAGACTTATCAGTGTTTTACAGATGCAGTTTCGAAGGTTACCAAGACACACTGTATGTCTACTCTGATAGACAATTCTACAGGGAATGCGACATCTATGGCACGGTTGACTTCATCTTTGGCAATGCTGCTGTTGTGTTCCAAAATTCTAACATATTTGCAAGAAACCCGCCCAACAAAGTGAACACCATCACTGCCCAAGGTCGAACCGATCCAAACCAAAACACTGGAATTTCCATTCACAATTGCAGAGTCACAGCTGCCTCAGATTTGACTCCGGTCCAAAACTCGGTTAAGACTTATCTTGGAAGACCTTGGAAGCAATATTCGAGAACAGTTTTCATGAAGACTTATCTTGACGGTTTGATCAATCCAGCAGGTTGGTTAGAATGGAGTGGTGACTTTGCATTGGACACATTATATTATGGAGAGTACATGAACACTGGCCCAGGTTCTTCTACTTCTGGAAGAGTTAATTGGAAAGGTTATCGTGTGATAACTACGGCTTCTGAGGCCTTAAAGTTCACCGTTACTAACTTCATTGCTGGAAACACATGGTTACCTTCCACCAAAGTTCCTTTTACATCTTCTCTTTAA 1548 0.4322 MKSSRVLLPLFIPFLLSSFVSSYSSNDVQLWCNQTPNPQPCQYFFTNNPTYQYQPIKQKSDFFKLSLQLAQQRALNAHVSTLSLGSKCRNPREKAAWADCVQLYEQTIRKLNQTLDPNTKCSQLDTQTWLSTALTNLETCKAGFYDLGVQDYLLPFMSNNVSQLLSNTLALNKVQYEESNYKDGFPAWVKPGDRKLLQASSPASNANVVVAKDGSGKYTTVSAAINAAPKSSSGRYVIYVKGGVYNEQVEIKANNIMLVGDGIGKTIITGSKSVGGGTTTFSSATVAVVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVYSDRQFYRECDIYGTVDFIFGNAAVVFQNSNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLTPVQNSVKTYLGRPWKQYSRTVFMKTYLDGLINPAGWLEWSGDFALDTLYYGEYMNTGPGSSTSGRVNWKGYRVITTASEALKFTVTNFIAGNTWLPSTKVPFTSSL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01631 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Spst4g01631 515 FunFam Pectinesterase 201 515 - -
Spst4g01631 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 174 IPR035513 -
Spst4g01631 515 Pfam Plant invertase/pectin methylesterase inhibitor 27 171 IPR006501 GO:0004857
Spst4g01631 515 PANTHER PECTINESTERASE 20 507 - -
Spst4g01631 515 Gene3D - 202 515 IPR012334 -
Spst4g01631 515 FunFam Pectinesterase 23 174 - -
Spst4g01631 515 NCBIfam pectinesterase inhibitor domain 1 173 IPR006501 GO:0004857
Spst4g01631 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 174 IPR035513 -
Spst4g01631 515 SMART complete 240 418 IPR006633 -
Spst4g01631 515 CDD PMEI-like_3 30 173 - -
Spst4g01631 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Spst4g01631 515 SMART PMEI_2 23 171 IPR006501 GO:0004857
Spst4g01631 515 Pfam Pectinesterase 207 501 IPR000070 GO:0030599|GO:0042545
Spst4g01631 515 SUPERFAMILY Pectin lyase-like 201 512 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01631 Spst-Chr4 55997650 55999303 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01631 10 515 Carbohydrate Esterase AT2G45220 68.431 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01631 K01051 - gmx:100783964 881.708