Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01623 CCAGAGAAGAGACAGAGAGTTCCGTCTGCTTACAACCGCTTCATCAAGGATGAGATTCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACATATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAGGGAGAGGACGTGCTTATCAAAGATGGGTTTTTTGCACCAGCTAATGTAGGTGTCTCTCCCTACTAG 267 0.4607 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEGEDVLIKDGFFAPANVGVSPY 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01623 88 Pfam YABBY protein 1 52 IPR006780 GO:0007275
Spst4g01623 88 CDD HMG-box_SF 6 42 - -
Spst4g01623 88 PANTHER PROTEIN YABBY 6-RELATED 1 64 IPR006780 GO:0007275
Spst4g01623 88 FunFam Axial regulator YABBY 1 69 - -
Spst4g01623 88 SUPERFAMILY HMG-box 1 46 IPR036910 -
Spst4g01623 88 Gene3D High mobility group box domain 1 67 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01623 Spst-Chr4 55798678 55799380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01623 1 88 C2C2-YABBY Transcription Factor Family AT2G45190 82.609 7.29e-50 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Spst4g01623 YABBY 4.7e-36 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01623 K25796 - gmx:100794423 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01623 4 55798678 55799380 Spst4g01623 4 55798678 55799380 ECH