Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01615 ATGCTTGTAGCAGCAACAGATACAACTGCAGCCACATTAACCTGGGCTATGAATGCACTACTAAGAAATCCTAGAGTAATGAAGAAAGCTCAAGATGAAATTAGGACTTTGGGAGGTAAAAAAGAATTTGTAGATGAAGATGATATTGGAAAGTTTCCCTATCTGAAGGCTGTGATAAAAGAGACACTGAGACTGCACGCACCAGTACCACTACTTGTGCCAAGAGAAACAAATAAAGCATTTACTATAGGTGGTTATGAAATTCCAGCCAAAACAATGGTGTATGTGAATGCTTGGGCTATCCATAGAGACCCTGAGATTTGGAAAGACCCATTTGAGTTTTACCCCGAGAGGTTTTTAGATAGTAGTACAACTTTTCGAGGGAAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGTAGAATTTGCCCTGGTATGCCTATGGCAGTTGCCTCAGTGGAACTTACTCTTGCCAATCTTCTGAATGCATTTGATTGGGAATTGCCACCAGGAATGACAACAAAAGACATTGACACTGAAGTGTTGCCGGGAATTACAACTCATAAGAAGAATTCGCTGTGTGTTTTGGCCAAGTGTGTAGTGTAA 606 0.4059 MLVAATDTTAATLTWAMNALLRNPRVMKKAQDEIRTLGGKKEFVDEDDIGKFPYLKAVIKETLRLHAPVPLLVPRETNKAFTIGGYEIPAKTMVYVNAWAIHRDPEIWKDPFEFYPERFLDSSTTFRGKDFELIPFGAGRRICPGMPMAVASVELTLANLLNAFDWELPPGMTTKDIDTEVLPGITTHKKNSLCVLAKCVV 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01615 201 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 136 145 IPR017972 GO:0005506|GO:0016705
Spst4g01615 201 PRINTS P450 superfamily signature 57 68 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 PRINTS P450 superfamily signature 143 154 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 PRINTS P450 superfamily signature 4 21 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 PRINTS P450 superfamily signature 134 143 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 SUPERFAMILY Cytochrome P450 1 196 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 Pfam Cytochrome P450 1 191 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 PANTHER CYTOCHROME P450 71B11-RELATED 1 198 - -
Spst4g01615 201 FunFam Predicted protein 2 195 - -
Spst4g01615 201 Gene3D Cytochrome P450 1 199 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 PRINTS E-class P450 group I signature 56 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 PRINTS E-class P450 group I signature 133 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 PRINTS E-class P450 group I signature 13 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 PRINTS E-class P450 group I signature 97 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g01615 201 PRINTS E-class P450 group I signature 143 166 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01615 Spst-Chr4 55663142 55663747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01615 1 190 Cytochrome P450 AT1G13080 57.068 1.34e-75 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01615 - - gmx:100801312 322.398