Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01603 ATGACTTCCCCTTTGCTTCCCTTTCTCTGCCTCTCAATGATTCTGTTACCCCTTCAACTCATCAGTGTTGTAGCCCAAACCAAAACCAAGTTAGCTATTGGTGATTCTCATACTGCAGGAAAAAGCACAACCCCATGGTTGGTTTCATCACCTTCTGGTGTCTTTGCCTTTGGTTTCCTCCCACTTGAGAACTCACCTGATGATTTCATACTATGCATTTGGTATGCCAATATTCAAAACAAGACCGTAGTTTGGTTTGCCAATAGGGAAAAGCCTGCACCAAAGGACTCAAAAGTGGAGCTTACTGCTGATGATGGGTTGGTGCTCACTGCCCCCAGTGGTGACCAGTTATGGAAGACTGGAACCAGTGTTAGAGTTTCAAGTGGTGTCTTTAATGACACTGGCAACTTTGTCCTTCAGGATGGTGGCTCCAACAGTGTTTGGGAGAGTTTCAAGGATTATAGAGACACCTTGCTGCCCTATCAGACTCTGGAAAAGGGTCAAAAGCTTTCTTCTAAGCTTAGGGGGAATGATTTCAACAGTGGCAGGTTTGAGCTATTTTTCCAAAACGATGGTAATCTTGTGATGCACTCTATAAATTTACCATCTGGATATTCTAATGAAAACTACAATGAAAGTGGAACCATTGAGTCCAACACTGCTAGTGCTGGGATTCGATTGGTGTTTGATAGATCAGGAGACCTATATATTTTGAGAGCGAACAATGAAAAGTATATCCTGTCAGACGGGAGTATTGGACCTTCTACCACTCAATTTTACCTTAGAGCAACTCTTGATTTTGATGGAGTGTTCACACTCTATCAGCATCCAAAGGATTCTTCTGGCAGTGGAGGTTGGACCTCAGTGAGGTCTTATCCAGAAAATATCTGTAAGAGCCATCTTGCTGCTGCAAGTAGTGGTGTTTGCGGATATAATAGCATATGCAAATTAGGAACTGATAAGAGACCAACTTGTCAGTGTCCAAAATGGTACTCGTTGGTTGACCCTGATGATCCCTATGGTAGCTGCAAACCCGATTTTGTACAAGAATGTGTTGAAGATGAAGATAGCAACATAAAGGATCTATATGATTATGAGGTGTTGATCGATACTGATTGGCCTCTTTCAGATTATGTGCTTCAAAAACCCTTTAATGAAGACCAATGCAAACAATCTTGTATGGAAGATTGTATGTGTTCTGTTGCCATTTTCAGGCTAGGCGACAGCTGCTGGAAGAAGAAGTTGCCACTTTCAAATGGTAGAGTTGATCCCACACTTAATGGTGCAAAGGCCTTCATGAAAGTGAGGAAGGACAACTTCTCCTTGATTGGTCCTCCAATAATTGTGAAGAAGAATAGTAGGAACACTTTGATTTTGGTTGGATCGGTGCTTTTGGGTAGTTCTGCTTTTCTCAATCTCATATTGGTTGTAGCAATCTGCTTGAGCACTTCCTATGTTTTTCAGTACAAGAAGAGGCTTAGAAGACTTGGCAAAAATGACTTGGAAACCAACTTGCGTTGCTTTACTTATGAGGAACTTGAAGAAGCCACTGATGGCTTTGACAAAGTGCTAGGGAAGGGAGCTTTTGGCATTGTGTATGAAGGAGTCGTCAACATGGGTTCCATTACTCGTGTGGCGGTGAAAAGGTTGAACACTTTTCTCTTGGAAGAGGTTCAGAAGGAATTCAAGAATGAACTGAATGTCATTGGCTCAACACACCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGACCGAATCAGAAAGGTTACTTGTATATGAGTATATGAGCAATGGCACTTTAGCAAAACTTCTTTTTGATGGGGAGAAACCAAGTTGGCAACTTAGGCTACAAATTGCTTCTGGGGTTGCTAGAGGACTTCTATATTTGCATGAAGAGTGCAGCACACAGATCATCCATTGTGACATAAAGCCTCAGAACATACTCCTTGATGATTACTGTACTGCAAGAATTTCAGACTTTGGATTGGCCAAGATTTTGAACATGAATCAGAGCAGAACCAACACTGTCATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCAATCACCGCAAAAGTGGATGTCTATAGTTATGGGGTGCTGTTGCTTGAGTTAGTTTCATGCAGAAAAAGTGTAGAATTTGAGATAGAAGATGAAGCCAAAGCAATCCTAACTGAATGGGCTTATGATTGCTACTCTGAAGGTGCTCTGCATGCGTTGGTTGAGGGTGATAAAGAGGCATTGGATGACATGAAGACAGTGGAGAATTTGGTGCTGATTGCCATTTGGTGTGTGCAAGAGGATCCTGGTCTTAGACCAACCATGAGAACTGTGACACAGATGCTTGAAGGTGTTGTTGAAGTGGAAGTGCCACCTTGCCCTTCACAAGTTACTATTCAATATTCCCTAAACTAG 2436 0.42 MTSPLLPFLCLSMILLPLQLISVVAQTKTKLAIGDSHTAGKSTTPWLVSSPSGVFAFGFLPLENSPDDFILCIWYANIQNKTVVWFANREKPAPKDSKVELTADDGLVLTAPSGDQLWKTGTSVRVSSGVFNDTGNFVLQDGGSNSVWESFKDYRDTLLPYQTLEKGQKLSSKLRGNDFNSGRFELFFQNDGNLVMHSINLPSGYSNENYNESGTIESNTASAGIRLVFDRSGDLYILRANNEKYILSDGSIGPSTTQFYLRATLDFDGVFTLYQHPKDSSGSGGWTSVRSYPENICKSHLAAASSGVCGYNSICKLGTDKRPTCQCPKWYSLVDPDDPYGSCKPDFVQECVEDEDSNIKDLYDYEVLIDTDWPLSDYVLQKPFNEDQCKQSCMEDCMCSVAIFRLGDSCWKKKLPLSNGRVDPTLNGAKAFMKVRKDNFSLIGPPIIVKKNSRNTLILVGSVLLGSSAFLNLILVVAICLSTSYVFQYKKRLRRLGKNDLETNLRCFTYEELEEATDGFDKVLGKGAFGIVYEGVVNMGSITRVAVKRLNTFLLEEVQKEFKNELNVIGSTHHKNLVRLLGFCETESERLLVYEYMSNGTLAKLLFDGEKPSWQLRLQIASGVARGLLYLHEECSTQIIHCDIKPQNILLDDYCTARISDFGLAKILNMNQSRTNTVIRGTKGYVALEWFKNMPITAKVDVYSYGVLLLELVSCRKSVEFEIEDEAKAILTEWAYDCYSEGALHALVEGDKEALDDMKTVENLVLIAIWCVQEDPGLRPTMRTVTQMLEGVVEVEVPPCPSQVTIQYSLN 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01603 811 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 801 - -
Spst4g01603 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 797 - -
Spst4g01603 811 SMART blect_4 36 155 IPR001480 -
Spst4g01603 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 201 IPR036426 -
Spst4g01603 811 ProSiteProfiles Bulb-type lectin domain profile. 38 152 IPR001480 -
Spst4g01603 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 25 152 - -
Spst4g01603 811 SUPERFAMILY Protein kinase-like (PK-like) 501 790 IPR011009 -
Spst4g01603 811 PIRSF SRK 1 810 IPR024171 GO:0004674
Spst4g01603 811 Gene3D Transferase(Phosphotransferase) domain 1 597 805 - -
Spst4g01603 811 Gene3D Phosphorylase Kinase; domain 1 494 596 - -
Spst4g01603 811 CDD B_lectin 49 151 IPR001480 -
Spst4g01603 811 Gene3D - 154 281 IPR036426 -
Spst4g01603 811 ProSitePatterns Protein kinases ATP-binding region signature. 524 548 IPR017441 GO:0005524
Spst4g01603 811 FunFam S-receptor-like serine/threonine-protein kinase 488 596 - -
Spst4g01603 811 Pfam D-mannose binding lectin 82 166 IPR001480 -
Spst4g01603 811 ProSiteProfiles Protein kinase domain profile. 518 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01603 811 SMART serkin_6 518 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01603 811 Pfam Protein kinase domain 521 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01603 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Spst4g01603 811 Gene3D - 22 152 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01603 Spst-Chr4 55386195 55388630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01603 504 791 Receptor kinase-like Gene Family AT5G16000 42.662 9.56e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Spst4g01603 Pkinase 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01603 - - vra:106773297 1390.94