Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01579 ATGGGGCCAAACCCTGCGGCCGCGAAACAAGCGGAGAAGCTCCGGATTGACGGTAACACTTACTTCAAGAAAGACCGTTTCGGTGCCGCCATAGACGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGATTTACTGGTCGAATCGCGCACTGTGCCATCTCAAGCGCAATGACTGGGAGAGAGTGGAGGAGGACTCTCGGAAGGCAATTCAGTTGGACAGCAGTTCAGTTAAGGCCCACTATATGTTGGGGCTCGCATTGCTACGGAGACAAGAATCTGCCAAGGGAATTAAAGAATTGGAGAAGGCTTTGGATCTCGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCCAAATACCATGAGTGGGAGCTATCATCGGCCGAACGATCGTGGGAATTGCAGAGCTTGAAAGAAGCATGCGAGTCTGCTCTGAAGGAAAGGCATTTTCTCGATTTCTCCCAAACGGAAGGATTTGTAGAGGAATCTACTACCAATTTGGAACAATTAGAGGCTTTAGAAGTTGTCTTCAATATAGCTGCAGAAGCTGACACACCTACTGAGGTGCCAGATTACTTATGCTGTAGAATCACACTCGACATTTTTCATGATCCTGTAATCACTCCAAGTGGGCTTACATATGAGAGAGCAGTGATTCTTGAGCACCTTCAGAAGGTGGGTAAATTCGACCCAATCACGCGGGAACCACTTGATCAATCACAATTAGTGCCAAACTTGGCCATTAAGGAAGCGGTTCAGGCATTCTTGGACAAACATGGGTGGGCTTACAAGGTAGACTAA 834 0.4808 MGPNPAAAKQAEKLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPIYWSNRALCHLKRNDWERVEEDSRKAIQLDSSSVKAHYMLGLALLRRQESAKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYHEWELSSAERSWELQSLKEACESALKERHFLDFSQTEGFVEESTTNLEQLEALEVVFNIAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDQSQLVPNLAIKEAVQAFLDKHGWAYKVD 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01579 277 Pfam U-box domain 200 272 IPR003613 GO:0004842|GO:0016567
Spst4g01579 277 Gene3D Tetratricopeptide repeat domain 5 141 IPR011990 GO:0005515
Spst4g01579 277 SMART Ubox_2 203 266 IPR003613 GO:0004842|GO:0016567
Spst4g01579 277 SMART tpr_5 11 44 IPR019734 GO:0005515
Spst4g01579 277 SMART tpr_5 79 112 IPR019734 GO:0005515
Spst4g01579 277 SMART tpr_5 45 78 IPR019734 GO:0005515
Spst4g01579 277 CDD RING-Ubox_CHIP 200 270 IPR045202 -
Spst4g01579 277 SUPERFAMILY TPR-like 9 139 IPR011990 GO:0005515
Spst4g01579 277 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Spst4g01579 277 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Spst4g01579 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 276 IPR013083 -
Spst4g01579 277 SUPERFAMILY RING/U-box 194 274 - -
Spst4g01579 277 ProSiteProfiles U-box domain profile. 199 273 IPR003613 GO:0004842|GO:0016567
Spst4g01579 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 275 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01579 Spst-Chr4 55115824 55120672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01579 7 276 U-box Gene Family AT3G07370 70.111 2.94e-140 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01579 K09561 - gmx:100796519 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03688 1 46600394 46608480 Spst4g01579 4 55115824 55120672 PCT