Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01578 ATGACAAATTCCTTCAAAGTTAAACTTGGCCAAGGTGGTTTTGGTGCAGTATACAAAGGAAACCCACCTGTTGGTTGTCCTGTGGCTGTAAAATTATTAAATGCATCTAAAGGAAATGAAGAATTTATCAATGAGGTAGCTAGCATCAGCAGAACCTCTCATGTTAACATTGTCACACTTCTAGGATTTTGTTTGGAGGGGAGCAAGAAAGCTCTCATCTATGAGTTCATGGCTAATGGTTCCTTGGACAAGTTTATCTACAACAAAGGTTCAGAATCCATTACATCTTTGAGTTGGGATAATTTGTATCAAATCTCAAAAGGGATAGCTCGAGGGTTGGAGTACCTGCATAGAGGATGCAATACTCGAATTCTACACTTTGACATAAAGCCACACAATATTCTTTTGGATGAGAATTTTTGCCCCAAGATATCAGATTTTGGGCTAGCAAAGCTGTGTCCTAGGAAAGATAGCATTATTTCCATGGCAGATACTAGAGGTACACTGGGATATGTAGCTCCAGAAATGTGCAATAGACATTTCGGTGGAGTTTCACATAAGTCTGATGTTTATAGCTATGGGATGATGCTGCTAGAAATGGTGGGAGGGAGGAAGAACATCAATGCTGAAGCGAGTCACACAAGTGAGATATACTTTCCACATTTGGTATATACGAGGCTTGAGGAGGACAACAATTTGAGACCAGATCAAGTGATGCGCATAGAAGAAAATGAGATTGTTAAGAGAATGACCATAGTGGGATTATGGTGCATTCAAACGTTTCCCAATGACAGACCTACAATGAGTGGAGTGGTAGAAATGTTGGAAGGCAACATGAATTCCTTGGAAATGCCACCAAAACCTTTGTTTTCTTCTCCTACTAGATCATTAACATGTTCTCTCTCTTGA 909 0.3982 MTNSFKVKLGQGGFGAVYKGNPPVGCPVAVKLLNASKGNEEFINEVASISRTSHVNIVTLLGFCLEGSKKALIYEFMANGSLDKFIYNKGSESITSLSWDNLYQISKGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKDSIISMADTRGTLGYVAPEMCNRHFGGVSHKSDVYSYGMMLLEMVGGRKNINAEASHTSEIYFPHLVYTRLEEDNNLRPDQVMRIEENEIVKRMTIVGLWCIQTFPNDRPTMSGVVEMLEGNMNSLEMPPKPLFSSPTRSLTCSLS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01578 302 SMART serkin_6 3 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01578 302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Spst4g01578 302 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Spst4g01578 302 Pfam Protein kinase domain 6 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01578 302 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 292 IPR045874 GO:0004672
Spst4g01578 302 Gene3D Transferase(Phosphotransferase) domain 1 78 285 - -
Spst4g01578 302 PIRSF ILK 3 284 - -
Spst4g01578 302 Gene3D Phosphorylase Kinase; domain 1 9 77 - -
Spst4g01578 302 ProSiteProfiles Protein kinase domain profile. 3 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01578 302 SUPERFAMILY Protein kinase-like (PK-like) 7 276 IPR011009 -
Spst4g01578 302 FunFam PR5-like receptor kinase 77 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01578 Spst-Chr4 55112409 55113317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01578 1 290 Receptor kinase-like Gene Family AT4G18250 60.201 1.11e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Spst4g01578 Pkinase 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01578 - - gmx:100799800 541.962