Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01577 ATGTACGATGTGTTCATCAATTTCAGGGGAAAAGACACTCGAGAGAAGTTCGTTTCTCATCTTCATTATGCCCTCTCAAAAGCTGGAGTCAACACTTTCCTTGACGATTCGAGTCTGCAAAGAGGAAATATGCTGAAAGCTGAACTCAAACGAGCAATAGAATGGTCTCGAATATATTTGGTTGTTTTCTCCAAAAACTATACTGAATCTACTTGGTGTCTTGATGAACTTGAACAAATCATGGAACGCGAGAAACTTTCTCACAGAAAGATAGACATAGTGCCCATATTTTACGATATCGATCCATCCGTTGTACGTCATCAGTCTGATAATTTTGGAAAAGCTTTGAAAGCAACTGTGAAGAAAAGATATTCAGGAAAAGAAGCAGAACTCGTGTTGTTCAGGTGGAGCCTAGCACTCACCAAAGCTTCGAATTTCTCTGGTTGGAATGCGAAGGATTACAGAGGCTATGTTACGAAGATATTAAATGGATGTGGACTACATGCTGATATTGGAATAGCAGTTCTGATAGAGCGTAGTCTCATAAAAGTTGAAAATAACAACAAACTAGGAATGCATCCTTTGCTGCAAGATATGGGAAGAGAGGTAATATGTGAAAGTTCAAGGCACGAACCATGGAAGCGTAGTCGATTGTGGTCTCAAGAAGATGTTCTTGATGTACTCACAAACAACACTGGGACAGAAGCTGTTCAGGGATTGGCTCTGAAATTGAATTTTACCAGCAGAGATTGCTTTGAAGCTTCTGCCTTTAAAGAAATGAAGGGATTGAGACTGTTGCAACTTGATCATGCACAACTCACCGGGGATTATGGGTATCTCTCTAAGCAACTGAGATGGGTATGTTGGCGAGGGTTTCCTTTTAAATACATTCCTAACAACTTTGATCTGAAAGGTGTAATTGCAATGGATTTAAGACATAGTACTCTTAGGCTACTCTGGAAGAAAACCCAGGTTTTGCAGAGTCTAAAAATCCTCAATCTTAGTCATTCCATACACTTGACAGAAACCCCTGACTTTTCAGGACTACCAAGTCTTGAAAAGCTCATTCTCAAAGATTGCCCAAGTTTATGCAAGGTACACCAATCCATTGGTGATCTCCAGAATATTCTATTTATAAATTTGAAGGACTGTACAAGCCTATGCAATCTCCCAAAAGAGATATATAAGTTGAAATCCTTAAAAACTCTCATTCTAGCTGGTTGTTCGAATATTGACAAACTGGAAGAAGATATAGTGCAGATGGAATCCTTAATAACTCTAATTGCTGAGAATACTGCTGTGAGACAAGTTCCTTTTTCAATAGTAAGCTTAAAAAGCATTGGATATATAACCCTGTGTGGATATGAAGGACTGTCACGCAATGTTTTTCCTTCTATCATTCAGTCTTGGATGTCACCAACAATGAATCCTCTATCTGGTATCAATTTGTTTTCTGGCACTTCTTCATCTCTAGTTTCCATGGATATTCAGAATAGTGTTTTGGGTGATCTGGCACCAATGCTTAGCAAACTTTCAAACCTTCGAAGTGTTTTGGTGCACTGTGACACAGAGTTTCAACTATCTAAACAATTGGGAACAATTCTGGATGATATGAATAATGTAAATTTGTCAGAAGTAGAAAACACATCACATACATCACAAATTGTACACCATTCCTTGGAGTCTTTCTTGATTGGAATTGGAAGTTACAAAGAAGTCTTCAATACTCTCAGCAAAAGCATATCCGAGGGATTGACAACCAGCGAATCTTTTGATGTTTTTCTCCCTGGTGACAAGGATCCATTTTGGTTGGCCCATACGGGTGAGGGACACTCAGTGTATTTCACTGTGCCTGACGATTTTCGCATGAAGGGAATGACTTTGTGTATTGTGTATTTATCAACCCCAGAAAACACAGCAATTGAGTGTCTTGTTAGTGTGTTAATGGTTAATTACACAAAGTGCACGATCCAGATATTCAAGCGAGACACAGTAATTTCCTTTAACGATGTAGATTGGCAAGGCATGATATCACATCTGGGATGTGGAGACAAGGTGGAGATTTTTGTGATTTTTAGGCATGGACTGGTTGTCAAGAAAACAGCTGTCTATCTAATGTATGATAAATCAATTGACATCAAAATGGAGCCTTCTCCTGAGCAAATGAAAGAGCCAGAACAAGAGCCAAAAAAAGAGGCAGAACAAGAACCAAAAAGAGAGGCAGAAAAAGGGCCAAAGAAAAACTACTTTGTAAGATGCATCTGTAAAATTGTAATGTGTAAGATGCAAGATGAGTAG 2298 0.3877 MYDVFINFRGKDTREKFVSHLHYALSKAGVNTFLDDSSLQRGNMLKAELKRAIEWSRIYLVVFSKNYTESTWCLDELEQIMEREKLSHRKIDIVPIFYDIDPSVVRHQSDNFGKALKATVKKRYSGKEAELVLFRWSLALTKASNFSGWNAKDYRGYVTKILNGCGLHADIGIAVLIERSLIKVENNNKLGMHPLLQDMGREVICESSRHEPWKRSRLWSQEDVLDVLTNNTGTEAVQGLALKLNFTSRDCFEASAFKEMKGLRLLQLDHAQLTGDYGYLSKQLRWVCWRGFPFKYIPNNFDLKGVIAMDLRHSTLRLLWKKTQVLQSLKILNLSHSIHLTETPDFSGLPSLEKLILKDCPSLCKVHQSIGDLQNILFINLKDCTSLCNLPKEIYKLKSLKTLILAGCSNIDKLEEDIVQMESLITLIAENTAVRQVPFSIVSLKSIGYITLCGYEGLSRNVFPSIIQSWMSPTMNPLSGINLFSGTSSSLVSMDIQNSVLGDLAPMLSKLSNLRSVLVHCDTEFQLSKQLGTILDDMNNVNLSEVENTSHTSQIVHHSLESFLIGIGSYKEVFNTLSKSISEGLTTSESFDVFLPGDKDPFWLAHTGEGHSVYFTVPDDFRMKGMTLCIVYLSTPENTAIECLVSVLMVNYTKCTIQIFKRDTVISFNDVDWQGMISHLGCGDKVEIFVIFRHGLVVKKTAVYLMYDKSIDIKMEPSPEQMKEPEQEPKKEAEQEPKREAEKGPKKNYFVRCICKIVMCKMQDE 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01577 765 SMART till_3 1 146 IPR000157 GO:0007165
Spst4g01577 765 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 160 504 IPR044974 GO:0006952
Spst4g01577 765 MobiDBLite consensus disorder prediction 716 744 - -
Spst4g01577 765 Gene3D - 1 169 IPR035897 -
Spst4g01577 765 Pfam TIR domain 2 149 IPR000157 GO:0007165
Spst4g01577 765 SUPERFAMILY L domain-like 192 519 - -
Spst4g01577 765 Gene3D Ribonuclease Inhibitor 242 565 IPR032675 -
Spst4g01577 765 Coils Coil 411 431 - -
Spst4g01577 765 SUPERFAMILY "Winged helix" DNA-binding domain 169 228 IPR036390 -
Spst4g01577 765 ProSiteProfiles TIR domain profile. 1 166 IPR000157 GO:0007165
Spst4g01577 765 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 164 - -
Spst4g01577 765 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 149 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01577 Spst-Chr4 55045852 55050634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01577 158 444 WRKY Transcription Factor Family AT4G12020 31.683 5.22e-35 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01577 - - gmx:100806743 894.804