Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01576 ATGGAATCTGTGGCTTCTGGTTCTTGCTCTTCTTCATCAAAATCCAAAACCCAGTGGATATACGATGTGTTTCTGAACTTCAGAGGAGGAGACACTCGTAGCACCTTCGTTTCCCATCTCCACAGTGCCCTTTCAAACGCGGGAATCCACACTTTCATCGATGAGGGGCTTCAGAAGGGACAGAACCTGGGGCCAGAACTGCTGCGAGCAATTGAAGGGTCTCAGATAGCAATAGTTGTGTTCTCCAAGAACTACGCTGAATCTGGTTGGTGTCTTGACGAGTTGGCGAAAATTGCAGAATGTCACAGAAGTCATGGGCAGGTTGTTGTGCCCATATTTTACGACGTTGATCCATCGGTTGTTCGTAGACAAACGGGTGATTTTGGCAAAGCGATGGAAGCAGTTGGTGTGAGAAAATTCCAGGGAAAGATCTTGCTCGATTCATTGATGAGGTGGAGCGACGCACTCCACCAGGTTGCAAATTTTACTGGCTGGGATATGAGGCAGTGCAGAGATGAAGCTGAACAAGTGAAGAAAATTGTAAATGGAATTTTGGTAGAGCTAGACAACACATTATTATCCATTACCCAGTTTCCAGTTGGCTTAGAATCTCGTGTAAAAGAAGTGATTCGGTTTATTGAAAAACAATCAGGCAAAGTTTGTAAAATAGGGATCTGGGGGATGGGTGGATCGGCAGGAACCACTTTGATTGAGGAAAGACTTCGTGGAAAAAGAACACTCATTGTACTTGATGATGTGACTATGTTGGAGCAATTGCATGCCCTATGTGGAAATCGTAAATGGATAAGCTATGGAAGTGTGTTTATTGTTACATCTAGAGACATGAGATTACTTAATTTACTTGAAGTTGATCACATTTGTAGAGTGGAGGAAATGAATGAAGATGAGTCTCTTGAGCTTTTTAGTTGGCATGCTTTCAGGGATGTAACTCCGACAGAAGACTTCATTGAGGTCTCAAGAAATGTGGTTTCTTATTGTGGAGGACTACCACTAGCCCTTGAAGTGCTTGGATCTTACTTGCACAAGAGAACCAAACAGGAATGGAAAAGTGTATTATCAAAGCTAAAAATAATTCCCAATAACCAAGTTCAGGAGAAATTAAGAATAAGCTTTGATTGTTTACAGGATCAGATGGAAAGGGATATTTTTCTTGACATTTGTTGTTTCTTTATTGGAAAAGATAGAGGCTATGTTACGGAGATACTGAATGGCTGTGGACTGCATGCTGATATTGGAATAACAGTTCTTATAGAGCGTAGTCTCGTGAAAGTTGAAGAGAATAATAAACTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAGATTATTCGTCACAGTTCAACAAAGGATCCTGGGAAGCGCAGCCGATTGTGGTTTCATGAGGATGTACTTGATGTATTGACATATAACACTGGGACAGAAGCCGTTGAGGGATTGGCATTGAAATTGCATGGAATTGGTAGAGATTGCTTTGAAGCAAATGCCTTTAAGGAAATGAAAAGATTGAAACTTTTGCAGCTTGATTCTGTACAACTTACTGGGTCTTTTGGGTATCTTTCAAAGCAGCTGAGATGGGTTTGTTGGCAAGGATTTCCTTTGAAATACATACCTGGAAACTTTTATCAAGGAAGTGTAGTTGCGATAAACTTAAAACACAGTAATCTTAAACTAGTGTGGAAGGAACCTCAGTTGCTGGAGTGCCTAAAAATCCTCAATCTTAGTCATTCCAAAAACTTGGCCACGACCCCTGACTTCTCTAAACTACCAAATCTTGAAAAGCTCATTCTCAAAGATTGTCCACGTTTGTGCAAGGTACACCAGTCCATTGGAGATCTCTGCAAACTTCTGCTGATAAATTTGAAGGACTGTACAAGTCTTGGCACTCTTCCAAGGAGAATCTATAAGTTGAAATCTGTGAAAACTCTAATCCTCTCTGGTTGTTTGAAGATGGACAAGTTGGATGAAGACATAGTGCAGATGGAATCCTTAACAACTTTAGTAGCAGAAAATATCGCTGTGAAACAAGTTCCCTTTTCGATAGTAAGATCAAAGAGCATTGGATATATATCCCTGTGTGGACATAAAGGATTATCACGTAATGTTTTTCCGTCTATCATTTGGTCTTGGATGTCACCAACAGTAAATCCCCTATCTGGTATTTACCCATCTTGGGGCATGTCATCGTCTCTAACCTCCATCGATGTGCAGAGTAACAATTTGGGTGATCTACCATCAACACTTAAAAGCCTTTCAAAACTTCGAAGTGTTTTGTTGCATTGTGACACGGAGCTTCAACTATCTAAAGAATTAAGAACAATTTTGGATGATGTGTGTGATGTAAATTCTATTAAATTAGAAGTAATGTCGCATACATCACAGCTCAGAGAACATTCGCTGAGGCCTTATTTGATTGAAATAGGAAGTTATCATGAAGTCTTCAATACTCTCAGCAAGAGCATATCAGAGGTTCCTTCTGCCAACTTTCTTTTGATCATTAATCTTGGAAAAATATCTAAAGGAAAATCCTGTGCATGCCTTCTAGAGCTTCCCCTTTCTTTCAAATAG 2589 0.4021 MESVASGSCSSSSKSKTQWIYDVFLNFRGGDTRSTFVSHLHSALSNAGIHTFIDEGLQKGQNLGPELLRAIEGSQIAIVVFSKNYAESGWCLDELAKIAECHRSHGQVVVPIFYDVDPSVVRRQTGDFGKAMEAVGVRKFQGKILLDSLMRWSDALHQVANFTGWDMRQCRDEAEQVKKIVNGILVELDNTLLSITQFPVGLESRVKEVIRFIEKQSGKVCKIGIWGMGGSAGTTLIEERLRGKRTLIVLDDVTMLEQLHALCGNRKWISYGSVFIVTSRDMRLLNLLEVDHICRVEEMNEDESLELFSWHAFRDVTPTEDFIEVSRNVVSYCGGLPLALEVLGSYLHKRTKQEWKSVLSKLKIIPNNQVQEKLRISFDCLQDQMERDIFLDICCFFIGKDRGYVTEILNGCGLHADIGITVLIERSLVKVEENNKLGMHDLLRDMGREIIRHSSTKDPGKRSRLWFHEDVLDVLTYNTGTEAVEGLALKLHGIGRDCFEANAFKEMKRLKLLQLDSVQLTGSFGYLSKQLRWVCWQGFPLKYIPGNFYQGSVVAINLKHSNLKLVWKEPQLLECLKILNLSHSKNLATTPDFSKLPNLEKLILKDCPRLCKVHQSIGDLCKLLLINLKDCTSLGTLPRRIYKLKSVKTLILSGCLKMDKLDEDIVQMESLTTLVAENIAVKQVPFSIVRSKSIGYISLCGHKGLSRNVFPSIIWSWMSPTVNPLSGIYPSWGMSSSLTSIDVQSNNLGDLPSTLKSLSKLRSVLLHCDTELQLSKELRTILDDVCDVNSIKLEVMSHTSQLREHSLRPYLIEIGSYHEVFNTLSKSISEVPSANFLLIINLGKISKGKSCACLLELPLSFK 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01576 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 393 IPR027417 -
Spst4g01576 862 Pfam NB-ARC domain 237 364 IPR002182 GO:0043531
Spst4g01576 862 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 165 IPR035897 -
Spst4g01576 862 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 233 789 IPR044974 GO:0006952
Spst4g01576 862 PRINTS Disease resistance protein signature 222 237 - -
Spst4g01576 862 PRINTS Disease resistance protein signature 571 587 - -
Spst4g01576 862 Gene3D - 298 382 IPR042197 -
Spst4g01576 862 SUPERFAMILY L domain-like 439 803 - -
Spst4g01576 862 SMART till_3 20 162 IPR000157 GO:0007165
Spst4g01576 862 Gene3D - 14 196 IPR035897 -
Spst4g01576 862 Gene3D - 233 293 IPR027417 -
Spst4g01576 862 Gene3D Ribonuclease Inhibitor 498 839 IPR032675 -
Spst4g01576 862 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 190 - -
Spst4g01576 862 ProSiteProfiles TIR domain profile. 19 188 IPR000157 GO:0007165
Spst4g01576 862 Pfam TIR domain 21 193 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01576 Spst-Chr4 55029305 55038996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01576 212 638 WRKY Transcription Factor Family AT5G45050 33.763 4.44e-64 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01576 - - vra:106773334 1050.04