Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01573 ATGGACTCTAGCCTGACTATAGTGATGGAATTTAGCCATCTGGAGGTTTTAGCTCTTCTTTCAGATTTACCAGTCAACGCTCTGCAGCTCCAAGATCTAACACAACCGAAAGAATTGTGTCGGGTAGTAATAGTTGTTTTCACCGAAACCTATGCTGAATCTGCTTGGTGCCTTCATGAGCTTCAACAAATCATTAAATGGCACGAAACTTATTGCCGGCATGTTCTGCCGGTATATTACGAAATTCAGCCATCTGATGTACGGCTTCAGAAGAGTAATTTTGGAAAAGCCTTGAAAGCAACTGCACAACAAACATTTTCAGGACAAGAAGTGGAACATGCCTTGTCCAGGAGTGATGCTGAACTAGTGGACAAAGTTGTTAAGAGCGTTCATCATTTACCAGTCTTGACTGCTACTAAATTTCCAGTTGGATTACAGTCCCATGTGGAAACACTTATTCAATATATTGAAAATACCAAAGTCAGTATCATAGGGATATGGGGAATTGGAGGAGTGGGTAAAACCACCATTGCCAAAGCCGTCTACAACCAAATTCATGATGTCCTAAAAACAAAAGTGGAGGTAAATAGTATTGAGAAGGGAGCAAGTTCGATTCAGGAAAGACTTTCTTGGAAAAGGATGCTCATTGTACTTAATGGTGCGAATCAATTTTACCCATTGAAAGACCTATGTGGAAATCGTAAATGGTTTGGTCAAGGAACTGTGATAATCATTACAACTAGAGACGTTAGCCTACTGAAAGAACTCAATGTTAATTATGTTTATAAAATCAATAACATGAACGAAAATGATTCCCTTGAGCTTTTTAGTTGGCATGCTTTTAGAGAAGACAAACCAATAGAAGATTTCGATGAACTTGCAAGAAATGTAGTTGCTTATTGTGAAGGACTACCGCTAGCTATTGAGGTCCTTGGATCTTATTTAAGTGGGAAGACAAACATAGAGTGGAAAACTGTATTGTCAAAACTAGAAATAATTCCCATTGGTCAAGTTAAAGAGAAATTGAGAATAAGTTTTGAAGGTTTACGCGATGACATGGAAAAGGATATATTTCTTGATGTCTGTTGTTTTTTTATTGGTAAAGACAGAGACTATGTTACAGAGATATTAAATGGCTGTGGTCTACATGCTGATATTGGAATAGCAGTACTGATACAGTGTTGTCTCTTAATAGTTGATAAGAATAACAAACTTCAAATGCACCCTTTGGTGCAAGATATGGGAAGAGAGATTATTCATAGAAGTTCAACAAAGGAACGTGAGAGGCGCAACCGACTATTTGCTGGCGATGCAAAATTTGTACTGACAAAGAAGAATGGAACAGAAGCTATTCAGGGATTGGCTCTGAAGTCACCATTACCCGCCACATCTTGGTTGGAAATTTCTTCTTTCCAGAATGAGCAGTTATTGAGACTGTCGGACTTTGACACTCTACTATACACTGGAGACTATCCGAACCTTTCTAAGCAACTGAGATGGATCTGTCATCACGAGTTTCCTTTCAAACATATACCTGAAAACTGTGATATGGAAGGTGTGATTGCGATTGATTTGAAATGCAGTAATCTTCGACGAGTCTGCAAAGAACCATGGGTTTTAAGGGGGCTAAAGTTCCTTAATCTAAGTCACTCCAAGTACTTAACTGAAACACCTGACTTTTCAGGACTACCAAGTCTTGAAAAGCTTATTCTAAAGGATTGTCCAAGATTGTGCAATGTACACCAATCCGTAGGAGACCTCTGCAGTCTATTAATCATGAATTTGAAGGACTGTATAAATCTAAGCTATCTCCCCAGAGAGGTATATAAGTTGAAATCTTTAAAAACTCTCATCCTGTCTGGTTGTTCCAAGATTGACATTTTGGAAGAAGATATAGTGCAGATGGAATCCTTGATAACACTAATTGCTGAAAATAAAGCTGTGAAACAAGTTCCCTTTTCTGTTGTAAGGTCAAAATGCATTGGATATATATCCTTACATGGATTTGAAGGATTGTCACACAATATTTTTCCTTCTATCATTGGGTTTTGGATGTCACCAACAATGAATCTCCTATCTTATATTAACCCGTTTTGCGTGGATATGGAGAATAATAATTGGTGTGACCTTGCGCCACTGTTTAGCAGCCTTGCAAATCTTCGAAGTATTTCTGTTCAATGTGACACGGAGCTTCAACTTTCTCTGCAAGTAAAAACAATTTTTGTCGAATACAGAGTAAATTTTACGGAATTAAGCCTTTCAAAGCCTCACGTGAGGTTTTCTTTGATTGGTGTTGGACGTTACAATAAATCCTTCAACACTCTCAGTGATACCATATCCGAGGGATGGCCAGGCAGCGAGTCTTGTGATGTTTGTCTTCCAGGTGACAACCACCCTTATTGGTTAACCCATGTGGGTGAAGGACATTCCGTTTATTTCACTATGCCTCAGGATTCTGACGTGAAGGGAATGGTTTTATGTGTTGTTTATTTATTCTCAGCTGAATATCTCAGCATGGGAACTAAATGTCTCACAAGTATCTTAATTGTTAATTACACAAAGTGCACATTCCAGATACACAAGCATGGCACAGTAATTTCCTTCAATGACATAGATTGGGAGGGCATAATATCAAATTTAGGATCTGGAGACAAGGTGGAGATTTTTGTGACTCTTGCTCATGGATTGGTGGTCAAGAGCACAGCTGTCTATCTGATATGTGGTCAATCAGAAGACGTTGAAACGTGGCCTGAGCCAAAGGAAAATGCCCTCTATAAATTCATAAAGAAAATATTTTGA 2799 0.3851 MDSSLTIVMEFSHLEVLALLSDLPVNALQLQDLTQPKELCRVVIVVFTETYAESAWCLHELQQIIKWHETYCRHVLPVYYEIQPSDVRLQKSNFGKALKATAQQTFSGQEVEHALSRSDAELVDKVVKSVHHLPVLTATKFPVGLQSHVETLIQYIENTKVSIIGIWGIGGVGKTTIAKAVYNQIHDVLKTKVEVNSIEKGASSIQERLSWKRMLIVLNGANQFYPLKDLCGNRKWFGQGTVIIITTRDVSLLKELNVNYVYKINNMNENDSLELFSWHAFREDKPIEDFDELARNVVAYCEGLPLAIEVLGSYLSGKTNIEWKTVLSKLEIIPIGQVKEKLRISFEGLRDDMEKDIFLDVCCFFIGKDRDYVTEILNGCGLHADIGIAVLIQCCLLIVDKNNKLQMHPLVQDMGREIIHRSSTKERERRNRLFAGDAKFVLTKKNGTEAIQGLALKSPLPATSWLEISSFQNEQLLRLSDFDTLLYTGDYPNLSKQLRWICHHEFPFKHIPENCDMEGVIAIDLKCSNLRRVCKEPWVLRGLKFLNLSHSKYLTETPDFSGLPSLEKLILKDCPRLCNVHQSVGDLCSLLIMNLKDCINLSYLPREVYKLKSLKTLILSGCSKIDILEEDIVQMESLITLIAENKAVKQVPFSVVRSKCIGYISLHGFEGLSHNIFPSIIGFWMSPTMNLLSYINPFCVDMENNNWCDLAPLFSSLANLRSISVQCDTELQLSLQVKTIFVEYRVNFTELSLSKPHVRFSLIGVGRYNKSFNTLSDTISEGWPGSESCDVCLPGDNHPYWLTHVGEGHSVYFTMPQDSDVKGMVLCVVYLFSAEYLSMGTKCLTSILIVNYTKCTFQIHKHGTVISFNDIDWEGIISNLGSGDKVEIFVTLAHGLVVKSTAVYLICGQSEDVETWPEPKENALYKFIKKIF 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01573 932 Pfam TIR domain 38 105 IPR000157 GO:0007165
Spst4g01573 932 PRINTS Disease resistance protein signature 301 315 - -
Spst4g01573 932 PRINTS Disease resistance protein signature 609 625 - -
Spst4g01573 932 PRINTS Disease resistance protein signature 163 178 - -
Spst4g01573 932 Gene3D - 131 195 IPR027417 -
Spst4g01573 932 SUPERFAMILY L domain-like 406 727 - -
Spst4g01573 932 ProSiteProfiles TIR domain profile. 1 134 IPR000157 GO:0007165
Spst4g01573 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 360 IPR027417 -
Spst4g01573 932 Gene3D - 266 350 IPR042197 -
Spst4g01573 932 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 101 IPR035897 -
Spst4g01573 932 Gene3D - 26 130 IPR035897 -
Spst4g01573 932 Gene3D Ribonuclease Inhibitor 468 788 IPR032675 -
Spst4g01573 932 Pfam NB-ARC domain 195 340 IPR002182 GO:0043531
Spst4g01573 932 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 38 723 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01573 Spst-Chr4 54963371 54970903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01573 143 644 WRKY Transcription Factor Family AT5G45050 28.342 1.95e-55 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01573 - - pvu:PHAVU_010G027900g 1073.15