Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01572 ATGTGTCGCGTAGCAATAGTTGTTTTCACCAAAACCTACGCTGAATCTGCTTGGTGTCTTCATGAGCTTCAACAAATCATCAAATGGCACGATACTTATTGCCGACACGTTCTGCCTGTATATTACGAAATTCAGCCATCTGATGTACGCCTTCAGAAGGGTGATTTTGGAAAATCCTTGAAAGCAACCGCAAAACAAACATTTTCAGGACAACAAGTGGAAGATGCCTTGTCCAGGTGGAGCCGTGCACTCACCAAAGCAGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGACCTAGTGGACAAAATTGTTAAGAGCGTTCTTAATTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTGCAGTTCCACGTGGAAAATGTGACCCGAATGATTGAAAATAAATCCACCGAAGTCAGTATCATAGGGATATGGGGAATGCGAGGATTGGGTAAAACGACCCTTGTCAAATCTATAAAGAGCGTTGCGATGGGAGCAAGTATGATTCAGGAAAGATTTTCTGGGAAAAGGGTGCTCATTGTACTTAATGATGCCAATCCATTTCGCCCATTGGAAGACCTATGTCGAAATAGTAAATGGTTTGGTCAAGGAACTGTGATAATCATTACAACTAGAGACGTTAACCTACTGGACGGATTCAATGTTAATTATGTTTATAAAATGAGTAATATGAACGAAAATGATTCCCTTGAGCTTTTTAGTTGGCATGCTTTTAGAGAAGAAAAACCAATAGAAGATTTCAATGGGCTTGCAAAAAAGGTAGTTGCTAATTGTGGAGGACTACCATTAGCTCTTGAGGTCCTTGGTTCTTATTTAAGTGAGAGGACAAAGAAAGAGTGGAAAATTGTTTTGTCAAAACTAGAAATAATTCCCAATATTCAAGTTAAAGAGAAATTGAGAATATGTTTAGACGGTTTGGGCGGTGACATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGACAGAGGCTATGTTACAGAGATACTGAATGGCTGTGGACTACATGCTGATAAAGGAATAACAGTTCTCATAGAACGTGGCCTCCTCAAAGTTGAAAAGAACAATAAGCTCGGCATGCATCATTTGTTGCGAGACATGGGAATAGATATTATTCTTGGAAGTTCAACTACGGAACGTGAGAAGCGCAACCGACTATGGTTTACTGAGGATGCAACATTTTTATTGACAAAGAATATGGGATCAGAAGCCATTCAGGGATGGGTTCTGAAGTCACCATTACCCATCGAATCTTCGTTGGAAATTTGTGCTTTCAAGGACAAGCTGATATTGGGACTGCTTGACTCTCTACTAATCACTGGAGACTATCCCAACCTTTCTAAGCAACTAAGTAATCTTCGACGAGTCTGGAAAGAACCACGGGTTTTAGGGTGGCTAAAATTCCTCAATCTAAGTCACTCCAAGTACTTGAAAGAATCACCTAATTTTTCGGGACTACCAAGTCTTGAACAGCTCATTCTCAAAGATTGTCCAAGATTGTGCAAGGTACACCAATCCATAGGAGATCTCTGCAATCTTCTACTGATAAATTTGAAGGACTGTATAAGTCTTAGCAATCTCCCCAAAGAGGTATATAAGCTGAAGTCTTTAAAAACTCTCATCCTGTCTGGTTGTGCCAAGATTGACATTTTGGAAGAAGATATAGTGCAGATGGAATCCTTGATAACACTAATTGCTGAATATAAAGCAGTGAAACAAGTGCCCTTTTCAATTGTAAGCTCAAAATGCATTGGATATATATCCTTAAGTGGATTTGAAGGATTGTCACACAATATTTTTCCTTCTATCATTCGGTCTTGGATGTCACCAACAATGAATCTCCTATCTTACATTAACCCGTTTTGTGTGGATATGGAGAATAATAATTGGCGTGAGCTTGCGCCATTGTTTAGCAACCTTGCAAATCTTCGAAGTATTTCTGTTCAATGTGACACGGAGCTTCAACTGTCTAAGCAAGTAAAATCAATTCTTGTCGAATACAGAGCAGAATTTAAAGAATTAAGTATTTCAAAGCCTCACGTGTGGTTTTCTTTGCTTGGTCGTGGACGTTACAATGAATTCTTCAACACTCTCAGTGATAGCATATCTGAGGTTCCTTCTCTAGCTTCTACCTTTGTGTACTTACCTTCACCATTCATTTTAGCTTTAAAAGAGCATGGAATTAATGGTCCTAATAAAGTATCTAAAAGAAACTACAATACTCCCGTTTTTGCACCTATCGCTTTTATAGGATTGGCAAGGAGTGAGTCTTCTGATGTTTGTCTTCCAGGTGATCCTCATTTGTTGGCTCATGTGGGTGAGGGACATTCAGTTTGTTTCACTCTGCCTCAGGACTGTGACTTGAAGGGAATGGCTTTGTGTGTTGTTTATTTATCAACCCCTGAAAACATGGCAACTGAATGTCTTACAAGTGTCTTAATTGTTAACTACACAAAGTGCACATTCCAGGTACACAAGCATGGGACAGTAATTTGCTTTAATGACATAGATTGGGAGGGCATAATATCAAATTTAAAATCTGGGGACAAGGTGGAGATTTTTGTGACTCTTGCTCATGGATTGGTGGTCAAGAACACAGCTGTCTATCTGAAATATGGTGAATCAAAGAAAAATGCCCCCCATAAATTCAAAAAGAAAATTGTAAGGTGTGACTTCTAG 2730 0.3901 MCRVAIVVFTKTYAESAWCLHELQQIIKWHDTYCRHVLPVYYEIQPSDVRLQKGDFGKSLKATAKQTFSGQQVEDALSRWSRALTKAANFFGWDESNYRSDADLVDKIVKSVLNLPVLSATKFPVGLQFHVENVTRMIENKSTEVSIIGIWGMRGLGKTTLVKSIKSVAMGASMIQERFSGKRVLIVLNDANPFRPLEDLCRNSKWFGQGTVIIITTRDVNLLDGFNVNYVYKMSNMNENDSLELFSWHAFREEKPIEDFNGLAKKVVANCGGLPLALEVLGSYLSERTKKEWKIVLSKLEIIPNIQVKEKLRICLDGLGGDMEKDIFLDVCCFFIGKDRGYVTEILNGCGLHADKGITVLIERGLLKVEKNNKLGMHHLLRDMGIDIILGSSTTEREKRNRLWFTEDATFLLTKNMGSEAIQGWVLKSPLPIESSLEICAFKDKLILGLLDSLLITGDYPNLSKQLSNLRRVWKEPRVLGWLKFLNLSHSKYLKESPNFSGLPSLEQLILKDCPRLCKVHQSIGDLCNLLLINLKDCISLSNLPKEVYKLKSLKTLILSGCAKIDILEEDIVQMESLITLIAEYKAVKQVPFSIVSSKCIGYISLSGFEGLSHNIFPSIIRSWMSPTMNLLSYINPFCVDMENNNWRELAPLFSNLANLRSISVQCDTELQLSKQVKSILVEYRAEFKELSISKPHVWFSLLGRGRYNEFFNTLSDSISEVPSLASTFVYLPSPFILALKEHGINGPNKVSKRNYNTPVFAPIAFIGLARSESSDVCLPGDPHLLAHVGEGHSVCFTLPQDCDLKGMALCVVYLSTPENMATECLTSVLIVNYTKCTFQVHKHGTVICFNDIDWEGIISNLKSGDKVEIFVTLAHGLVVKNTAVYLKYGESKKNAPHKFKKKIVRCDF 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01572 909 ProSiteProfiles TIR domain profile. 1 116 IPR000157 GO:0007165
Spst4g01572 909 PRINTS Disease resistance protein signature 271 285 - -
Spst4g01572 909 PRINTS Disease resistance protein signature 549 565 - -
Spst4g01572 909 PRINTS Disease resistance protein signature 147 162 - -
Spst4g01572 909 Gene3D - 236 319 IPR042197 -
Spst4g01572 909 Gene3D - 112 170 IPR027417 -
Spst4g01572 909 Gene3D - 1 111 IPR035897 -
Spst4g01572 909 Pfam TIR domain 2 122 IPR000157 GO:0007165
Spst4g01572 909 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 170 618 IPR044974 GO:0006952
Spst4g01572 909 Pfam NB-ARC domain 172 301 IPR002182 GO:0043531
Spst4g01572 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 330 IPR027417 -
Spst4g01572 909 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 93 IPR035897 -
Spst4g01572 909 Gene3D Ribonuclease Inhibitor 457 731 IPR032675 -
Spst4g01572 909 SUPERFAMILY "Winged helix" DNA-binding domain 312 412 IPR036390 -
Spst4g01572 909 SUPERFAMILY L domain-like 440 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01572 Spst-Chr4 54905205 54909260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01572 125 672 WRKY Transcription Factor Family AT5G45050 27.031 1.73e-43 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01572 - - pvu:PHAVU_010G027900g 1024.23