Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01571 ATGGAATTCGCGTCTTCTTCATGCGATGTGCTCATCAACTTTACCGGCGAAGACATCTGTAGGAAGTTCGTTTCTCATCTCGATTCTGCTCTCTCAGCTGCTGGATTCACCACTTTCCTTCACCAGGACAATCTAGTCAACTCCATGCAGCTCCAACATCTAACACAACCAAAAGAATTGTGTCGGATAGCAATAGTTGTTTTTACCAAAACTTATGCTGAATCTGCCTGGTGTCTTCATGAGCTTCAACAAATCATTAAATGGCACGAAACTTATTGCCGTCATGTTCTGCCCGTATATTACGAAATTCAGCCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAAAAGCCTTGAAAGCAACTGCGCAACAAACATTTTCAGGACAACAAGTGGAAGATGCCTTGTCCAGGTGGAGCCGCGCACTCACCAAAGCAGCAAATTTGTTTGGGTGGGATGAGAGAAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAACGTCCTTTATTTACCAGTCTTAGCTGCTACTAAATTTCCAGTTGGATTAGAGTCCCATGTGGAAAAACTGATTCGATATATTGAAAATACCAAAGTCAGTATCATAGGGATATGGGGAATGCGAGGATTTGGTAAAGCCACCGTCGCCAAAGCCGTCTACAACCAAATTCATGATACATTCGTAGGCTATGTGACAGAGATACTGAATGGCTGTGGACTACAGGCTGATATTGGAATAGCAGTTCTCATACAGCGTAGCCTCCTCAAAGTTGAAAAGAAAAATAAACTCGGCATGCATCATTTGCTACGAGAAATGGGAAGAGAAATTATTCGTAGAAGTTCAACAAAGGAACGTGAGCAGCGCATTCGACTGTTTGCTGACGAGGCTAAATTTGTACTGACAAAGAATAATGGAACAGCGGCTATTCAGGGATTGACTCTGAAGTCATCATTACCCATCACATATTGGTTGGAAATTTATGCTTTCCAGAACAAGGAGATATTGAGACTGCTGGAACTTTACTCTCAACTATTCACGAGAGACTATCGGAACCTTTCAAAGCAACTGAGATGGATCTGTCATCGAGGGTTTCCATTAAAATATATACCTAACAACTGTAATATGGAAGGTGCAATTGCGGTTGATTTAAAATACAGTAATCTCAGATGTGTCGGGAAACAACCATGGGTGTTAGGGTGGCTAAAATTTCTCAATCTAAGTCACTCCAAGTACTTGACGGAAACACCGGACTTTTCAGGACTACCAAGTCTTAAAAAGCTCATTCTCAAAGATTGTCCAAGTTTGTGCAAGGTACACCAATCCATAGGAGATCTCTGCAATCTTCTACTCATAAATTTGAAGGATTGTATAAGTCTTAGCAATCTCCCAAAAGAGGTATATAAGTTGAAATCTTTAAAAACTCTCATCCTATCTGGTTGTTCCAAGATTCACATTTTGGAAAAAGATATAGTGAAGATAGAATCCTTGATAACACTAATTGCTGAAAATAACGCAGTGAAACAAGTTCCCCTTTCAATTGTAAGCTCAAAATGCATTGGATATGTATCCCTACGTGGATTTGAAGGATTGTCACACAAAATTTATCCTTCTATCATTCGGTCTTGGATCTCACACAATATTAGGCCGTTTAGCACGCATATGGAGAATAATAATTGGCGTGACCTTTCGCCATTGTTTAGCAGCCTTGCAAATCTTCGAAGTGTTTTGGTTCAATGTGACACAGAGTTTCAACTATCTAAGCAAGTAAGAACAACACTTGTCGAATGCGGTGCAAATGTTACAAAATTAAGAACTTCAGAGCATCACTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACAATGAATTCTTCAACACTCTAAGCGATAGCATACATGAGGGATTGGCAAGGAGTGAATCTTCGTATGTTTGTCTTCCAGGTGACAATTGTCCTTATTGGTTAGCCCATGTGGGTGAAGGACATTCAGTTTGTTTCACTATGCCTCAGGACTGTGACGTAAAGGGAATGGCTTTGTGTGTTGTTTATTTATCAACCCCTGACAACTTGGCAACTGAATGTCTTACAAGTGTCTTAATTGTTAACTACACAAAGTGCACATTCCACATACACAAGCATGGCACAGTAATTTCCTTTGATGACAGAGATTGGGAGGGCATAATGTCAAATTTAGAATCTGGAGACAAGGTGGAGATTTTTGTGACTCTTGCTCATGGATTGGTTGTCAAGAACACAGCTGTGTATCTGATATATGCTGATCCAAATGACTTGGAAATGGAGGCTTGCCATCAGCCAAATAAAAATGTCTTCCATAAATTCTTAAAAGAAATTGTAACGTGTGACTTCAAGTCATTCTTTGAGGAAGCCAAGATCCTGAATGCAAAAACCACTCTTGCAAAAGGTCTCCATGGTCTTCCCGGATATGCATATGAAGTTCCCCCATTACTCGTGACAACACATCTGCAATGA 2496 0.4018 MEFASSSCDVLINFTGEDICRKFVSHLDSALSAAGFTTFLHQDNLVNSMQLQHLTQPKELCRIAIVVFTKTYAESAWCLHELQQIIKWHETYCRHVLPVYYEIQPSDVRLQKGDFGKALKATAQQTFSGQQVEDALSRWSRALTKAANLFGWDERNYRSDAELVDKIVKNVLYLPVLAATKFPVGLESHVEKLIRYIENTKVSIIGIWGMRGFGKATVAKAVYNQIHDTFVGYVTEILNGCGLQADIGIAVLIQRSLLKVEKKNKLGMHHLLREMGREIIRRSSTKEREQRIRLFADEAKFVLTKNNGTAAIQGLTLKSSLPITYWLEIYAFQNKEILRLLELYSQLFTRDYRNLSKQLRWICHRGFPLKYIPNNCNMEGAIAVDLKYSNLRCVGKQPWVLGWLKFLNLSHSKYLTETPDFSGLPSLKKLILKDCPSLCKVHQSIGDLCNLLLINLKDCISLSNLPKEVYKLKSLKTLILSGCSKIHILEKDIVKIESLITLIAENNAVKQVPLSIVSSKCIGYVSLRGFEGLSHKIYPSIIRSWISHNIRPFSTHMENNNWRDLSPLFSSLANLRSVLVQCDTEFQLSKQVRTTLVECGANVTKLRTSEHHLRFSLIGVGSYNEFFNTLSDSIHEGLARSESSYVCLPGDNCPYWLAHVGEGHSVCFTMPQDCDVKGMALCVVYLSTPDNLATECLTSVLIVNYTKCTFHIHKHGTVISFDDRDWEGIMSNLESGDKVEIFVTLAHGLVVKNTAVYLIYADPNDLEMEACHQPNKNVFHKFLKEIVTCDFKSFFEEAKILNAKTTLAKGLHGLPGYAYEVPPLLVTTHLQ 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01571 831 PRINTS Disease resistance protein signature 204 219 - -
Spst4g01571 831 PRINTS Disease resistance protein signature 470 486 - -
Spst4g01571 831 ProSiteProfiles TIR domain profile. 6 175 IPR000157 GO:0007165
Spst4g01571 831 Gene3D Ribonuclease Inhibitor 315 615 IPR032675 -
Spst4g01571 831 Gene3D - 4 171 IPR035897 -
Spst4g01571 831 SMART till_3 7 149 IPR000157 GO:0007165
Spst4g01571 831 SUPERFAMILY L domain-like 268 577 - -
Spst4g01571 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 263 IPR027417 -
Spst4g01571 831 Gene3D - 172 294 IPR027417 -
Spst4g01571 831 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 232 IPR044974 GO:0006952
Spst4g01571 831 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 152 IPR035897 -
Spst4g01571 831 Pfam TIR domain 10 171 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01571 Spst-Chr4 54850840 54859427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01571 404 516 WRKY Transcription Factor Family AT4G12020 32.743 2.98e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01571 - - pvu:PHAVU_010G027900g 737.258