Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01569 ATGTGTCGGGTAGCAATAGTTGTTTTCACCAAAAATTATGCTGAATCTGCTTGGTGTCTTCATGAGCTTCAACAAATCATCAAATGGCATGAAACTTATTGCCGACATGTTCTGCCCGTATATTACGAAATTCAGCCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAAACGCCTTGAAGGCAACTGCACAACAAACATTTTCAGGACAACAAGCGGAAGATGCCTTGTCCAGGTGGAGCCGCGCACTCACCAAAGCAGCAAATTTGTTTGGGTGGGATGAGAGCAATTACAGGAGTGATGCTGAGCTAGTGGACAAAATTGTTAAGAACATCCTTTATTTACCAATTTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCACGTGGAAAATGTGATGCGAATGATTGAAAATAAATCCACCGAAGTCAGTGTCATAGGGATATGGGGAGAGGGAGGATTGGGTAAAACCACCCTTGTCAAAGCCGTCTACAACCAAATTCAAGGTACATTCATGTATAAAAGTTTCATTGAAGATGTTACAGAAATTTGTCAAAGAGGGCATGTTCATTTCCAAGAAAAACTTATTTCACATGTCCTCAAAACAAAGGTCGAGATAAAGAGCCATGCGATGGACAAAACGACAATTCAAGAAAGATTTTCTGGGAAACGGGTGCTCATTGTACTTAATGATGCCAATCCATTTCACCCGTTGGAATACCTATGTCGAAATAGTAAATGGTTTGGTCAGGGAACTGTGATAATAATTTCAACGTCAGACGTTAGCCTATTGGACGAATCCAGTGTTAAATATATCTATAAAATGAGTAATATGAACGAAAATGATTCCCTTGAGCTTTTTAGTTGGCATGCTTTTAGAGAAGAAAAACCAATAGAAGATTTCAATGAACTTGCAAGAGATGTAGTTGCTTATTGTGGAGGACTACCACTAGTTCTTGAGGTACTTGGTTCTTATTTAAGTGAGAGGACAAAGAAAGAGTGGAAAAGTGTTTTGTCAAAACTAAAACTAATTCCCAGTGATCAAGTTAAAGAGAAATTGAGAATAAGTTTTGACGGTTTGCGCGGTGGGATGGAAAAGGATATATTTCTTGATGTATGTTGCTTCTTTATTGGTAAAGACAGAGGCTATGTTACAGAGATACTAAATGGTTGTGGACTAGATGCTGATACTGGAATTGCAGTTCTCATAGAGCGTAGCCTCCTCAAAGTTGAAAAGAGTAATAAACTCGGCGTACATCATTTGCTACGAGAGATGGGAAGAGAGATTATTCATAGAAGTTCAACAAAGGAACGTCAGAACCGCAACCGACTGTTTACTGACGATGCAAGATTTGTACTGACAGAGAATAATGGAACAGAAGCCATTCAAGGATTGATTCTCAAGTTACCATTAGCAATGACATCTTGGTTGGAAATTTGTGCTTTCCAGAACAAGCAGATATTGAGAGTGCCGGATCTTGACTCTCTATTATTCACTGGAGATTATCCAAACCTTTCTAAGCAACTGAGTAATCTTCGACGAGTCTGGAAACAACCACGGGTTTTAGGGTTAAAATTCCTCAATCTAAGTCACACCAGGTACTTGACAGAAACACCTGACTTTTCAAGACTACCAAGTCTTGAACAGCTCATTCTCAAAGATTGTCCAAGTTTGTGCAAGATTCACATTTTGGAAAAAGATATAGTGAAGATAGAATCCTTGATAACACTAATTGCTGAAAATAAAGCAGTGAAACAAGTTCCCCTTTCAATTGTAAGCTCAAAATGCATTGGATATGTATCCCTACGTGGATTTGAAGGATTGTCACACAAAATTTATCCTTCTATCATTCGGTCTTGGATCTCACACAATATTAGGCCGTTTAGCACGCATATGGAGAATAATAATTGGCGTGACCTTTCGCCATTGTTTAGCAGCCTTGCAAATCTTCGAAGTGTTTTGGTTCAATGTGACACAGAGTTTCAACTATCTAAGCAAGTAAGAACAACACTTGTCGAATGCGGTGCAAATGTTACAAAATTAAGAACTTCAGAGCATCACTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACAATGAATTCTTCAACACTCTAAGCGATAGCATACATGAGGGATTGGCAAGGAGTGAATCTTCTTATGTTTGTCTTCCAGGTAACAACCATCCTCATTGGTTGGCCCATGTGGGTGAAGGACATTCAGTTTGTTTCACTATGCCTCAGGACTGTGACGTAAAGGGAATGGCTTTGTGTGTTGTTTATTTATCAACCCCTGACAACTTGGCAACTGAATGTCTTACAAGTGTCTTAATTGTTAACTACACAAAGTGCACATTCCACATACACAAGCATGGCACAGTAATTTCCTTTGATGACAGAGATTGGGAGGGCATAATGTCAAATTTAGGATCTGGAGACAAGGTGGAGATTTTTGTGACTCTTGCTCATGGATTGGTTGTCAAGAACACAGCTGTGTATCTGATATATGGTGATCCAAATGAGTTGGAAATGGAGGCTTGCCATCAGCCAAATAAAAATGTCCTCCATCAATTCTTAAAAGAAATTGTAACGTGTGACTTCAAGTAA 2610 0.39 MCRVAIVVFTKNYAESAWCLHELQQIIKWHETYCRHVLPVYYEIQPSDVRLQKGDFGNALKATAQQTFSGQQAEDALSRWSRALTKAANLFGWDESNYRSDAELVDKIVKNILYLPILSATKFPVGLQSHVENVMRMIENKSTEVSVIGIWGEGGLGKTTLVKAVYNQIQGTFMYKSFIEDVTEICQRGHVHFQEKLISHVLKTKVEIKSHAMDKTTIQERFSGKRVLIVLNDANPFHPLEYLCRNSKWFGQGTVIIISTSDVSLLDESSVKYIYKMSNMNENDSLELFSWHAFREEKPIEDFNELARDVVAYCGGLPLVLEVLGSYLSERTKKEWKSVLSKLKLIPSDQVKEKLRISFDGLRGGMEKDIFLDVCCFFIGKDRGYVTEILNGCGLDADTGIAVLIERSLLKVEKSNKLGVHHLLREMGREIIHRSSTKERQNRNRLFTDDARFVLTENNGTEAIQGLILKLPLAMTSWLEICAFQNKQILRVPDLDSLLFTGDYPNLSKQLSNLRRVWKQPRVLGLKFLNLSHTRYLTETPDFSRLPSLEQLILKDCPSLCKIHILEKDIVKIESLITLIAENKAVKQVPLSIVSSKCIGYVSLRGFEGLSHKIYPSIIRSWISHNIRPFSTHMENNNWRDLSPLFSSLANLRSVLVQCDTEFQLSKQVRTTLVECGANVTKLRTSEHHLRFSLIGVGSYNEFFNTLSDSIHEGLARSESSYVCLPGNNHPHWLAHVGEGHSVCFTMPQDCDVKGMALCVVYLSTPDNLATECLTSVLIVNYTKCTFHIHKHGTVISFDDRDWEGIMSNLGSGDKVEIFVTLAHGLVVKNTAVYLIYGDPNELEMEACHQPNKNVLHQFLKEIVTCDFK 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01569 869 Gene3D - 114 274 IPR027417 -
Spst4g01569 869 Pfam NB-ARC domain 129 344 IPR002182 GO:0043531
Spst4g01569 869 SUPERFAMILY "Winged helix" DNA-binding domain 350 436 IPR036390 -
Spst4g01569 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 373 IPR027417 -
Spst4g01569 869 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 654 IPR044974 GO:0006952
Spst4g01569 869 Gene3D Ribonuclease Inhibitor 458 693 IPR032675 -
Spst4g01569 869 SUPERFAMILY L domain-like 476 657 - -
Spst4g01569 869 ProSiteProfiles TIR domain profile. 1 116 IPR000157 GO:0007165
Spst4g01569 869 Gene3D - 1 113 IPR035897 -
Spst4g01569 869 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 93 IPR035897 -
Spst4g01569 869 Pfam TIR domain 2 128 IPR000157 GO:0007165
Spst4g01569 869 PRINTS Disease resistance protein signature 147 162 - -
Spst4g01569 869 PRINTS Disease resistance protein signature 544 560 - -
Spst4g01569 869 PRINTS Disease resistance protein signature 314 328 - -
Spst4g01569 869 PRINTS Disease resistance protein signature 221 235 - -
Spst4g01569 869 Gene3D - 279 363 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01569 Spst-Chr4 54836148 54839972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01569 125 560 WRKY Transcription Factor Family AT5G45050 28.049 1.19e-49 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01569 - - pvu:PHAVU_010G027900g 1008.82