Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01567 ATGGAATTCGCGTCTTCTTCATTCGATGTGCTCATCAACTTTACCGGCGAAGACATCCGTAGGAAGTTCGTTTCTCATCTCGATTCTGCCCTCTCAGCTGCTGGATTGACCACTTTCCTTCACGGGGAGAATCTAGTCAAATCCATACAGCTACAAGATCTAACACAACCAAAAGAATTGTGTCGGGTAGCGATAGTTGTTTTCACCGAAACCTATGCTGAATCTGCTTGGTGTCTTCATGAGCTTCAACAAATCATTAGATGGCATGAAACTTATTGCCGGCATGTTCTGCCCGTATTTTACGGAATTAAGCCTTCTGATGTACGTCTTCAGAAAGGTGATTTTGGAAAATCCTTGAAAGAAACTGCACAAGAAACATTTTCAGAGCAACAAGTGGAACATGCCTTATCCAGGTGGAGCAGCGCACTCACCAAAGCAGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGAACAAAATTGTTAAGAGCGTTCTTAATTTACCAATCTTGACTGCTACCAAATTTCCAGTTGGCTTACAGTCCCATGTGGAAAAACTGATTCGATATATTAAAAATACACAAGTCACTACTATAATAGGGATATGGGGAATGAGAGGAGTGGGTAAAGCCACCGTTGCCAAAGCCGTCTACAACCAAATTCATGGTACATTCATATACTATGTTACAGAGATACTAAATGGCTGTGGACTACATGCTGATATTGGAATAACAGTTCTCATAGAGCGTAGTCTCATAAAAGTTGATAAGAACAACAAACTAAGAATGCATCCTTTGCTGCAAGACATGGGTAGAGAGATTATTCTTAGAAGTTCAACTACGGAACGTGAGAAGCGCAACCGACAGTTTGCTGATGATGTAAAATGTGTAGTGACAAAGAATAATGGAACAGAAGCTATTGAAGGATTGGCTCTGAAGTCACCATTATCAGTCGGATCTAGGTTGAAAATTTTTGCTTTGCAGAAAAAACCGATATTGAGACTGTCGGATATTGACTCTCTACTACTGAGTAGAGACTATCCGAACCTTTCTAAGCAACTGAGATGGATCTTTCTTCTAGGGTTTCCTTTAAAATTTATTCATAAAAACTGTGATATGGAAGGTGTAATTGCGATTCATTTCAAATGCAGTAATCTTAGACGACTCTGGAACGAACCACCGGTTTTAGGGTGGCTAAAGTTCCTCAATCTAAGCCACTCCAAGTACTTGACAGAAACATCTGACTTTTCAGGACTACCAAGTCTTGAAAAGCTCATTCTCAAAGATTGTCCAAGTTTGTGCAAGGTACACCAATCCATAGGAGATCTCTGCAATCTACTACTCATGAATTTGAAGGACTGTATAAGTCTTAGCAATCTCCCCAAAGAGGTATATAAGTTGAAATCTTTAAAAACTCTCATCCTTTCTGGTTGTTCCAAGATTGAAATTTTGGAAGAAGATATAATGCAGATGGAATCCTTGATAACACTAATTGCTGAAAATAAAGCAGTGAAACAAGTGCCCTTCTCAATTGTAAGCTCAAAATGCATTGGATATATATCCTTACGTGGATTTGAAGGATTGTCACACAATATTTTTCCTTCTATCATTCGGTCTTGGATGTCACCAACAATGAATCCCCTATCTTATATTAGTCCGTTTTGCATGGATATGGAGCATAATAATTTGGGAGACCTTGTGCCATTGTTTAGCAACCTTGCAAATCTTCGAAGTATTTCTGTTCAATGTGACGCGGAGCTTCAACTATCTAAGCAAGTAAAAACAATTCTTGTCGATTACAGAGTAAATTTTACAGAATTAAGGATTTCAAAGCATCACTTGAGGTTTTCTTTGATTGCTGTTGGACGATGCAATGAATTCTTCTACTCTCTCAATGATAGCATATATAAGGCATTCTCAAGGAGTGAATCTTGTGATCTTTGTCTGCCAGGTGACAACCACCCTTATTGGTTAGCCCATGGGAGTGAGGGAAATTCAATTTATTTCACTATGCCTCAGGACTGTGACGTAAAAGGAATGGCTTTGTCTGTTGTTTATTTGTCAACCCCTGAGACCATGGCAACTGAAAGTCTTACAAGTGTCTTAATTGTTAACTACACAAAGTGCACATTCCAGATACATAAGCATGGTACAGGAATTTCCTTCAATGATAAAGATTGGGAGGGCATAATATCAAATTTAGGTTCTGGAGACAAGGTGGAGATTTTTGTGACTCTGCCTCATGGATTGGTGGCTAAGAACACAGCTGTGTATCTGATATATGGTGTACCAGTGAAACAAGTGATATATGGAGAAAACAAATGCCCTACATATATATATTCATGA 2364 0.3896 MEFASSSFDVLINFTGEDIRRKFVSHLDSALSAAGLTTFLHGENLVKSIQLQDLTQPKELCRVAIVVFTETYAESAWCLHELQQIIRWHETYCRHVLPVFYGIKPSDVRLQKGDFGKSLKETAQETFSEQQVEHALSRWSSALTKAANFFGWDESNYRSDAELVNKIVKSVLNLPILTATKFPVGLQSHVEKLIRYIKNTQVTTIIGIWGMRGVGKATVAKAVYNQIHGTFIYYVTEILNGCGLHADIGITVLIERSLIKVDKNNKLRMHPLLQDMGREIILRSSTTEREKRNRQFADDVKCVVTKNNGTEAIEGLALKSPLSVGSRLKIFALQKKPILRLSDIDSLLLSRDYPNLSKQLRWIFLLGFPLKFIHKNCDMEGVIAIHFKCSNLRRLWNEPPVLGWLKFLNLSHSKYLTETSDFSGLPSLEKLILKDCPSLCKVHQSIGDLCNLLLMNLKDCISLSNLPKEVYKLKSLKTLILSGCSKIEILEEDIMQMESLITLIAENKAVKQVPFSIVSSKCIGYISLRGFEGLSHNIFPSIIRSWMSPTMNPLSYISPFCMDMEHNNLGDLVPLFSNLANLRSISVQCDAELQLSKQVKTILVDYRVNFTELRISKHHLRFSLIAVGRCNEFFYSLNDSIYKAFSRSESCDLCLPGDNHPYWLAHGSEGNSIYFTMPQDCDVKGMALSVVYLSTPETMATESLTSVLIVNYTKCTFQIHKHGTGISFNDKDWEGIISNLGSGDKVEIFVTLPHGLVAKNTAVYLIYGVPVKQVIYGENKCPTYIYS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01567 787 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 152 IPR035897 -
Spst4g01567 787 SUPERFAMILY L domain-like 268 588 - -
Spst4g01567 787 Pfam TIR domain 8 171 IPR000157 GO:0007165
Spst4g01567 787 Gene3D - 171 299 IPR027417 -
Spst4g01567 787 Gene3D Ribonuclease Inhibitor 369 647 IPR032675 -
Spst4g01567 787 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 231 IPR044974 GO:0006952
Spst4g01567 787 PRINTS Disease resistance protein signature 205 220 - -
Spst4g01567 787 PRINTS Disease resistance protein signature 471 487 - -
Spst4g01567 787 SMART till_3 7 149 IPR000157 GO:0007165
Spst4g01567 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 262 IPR027417 -
Spst4g01567 787 ProSiteProfiles TIR domain profile. 6 175 IPR000157 GO:0007165
Spst4g01567 787 Gene3D - 4 170 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01567 Spst-Chr4 54766863 54771052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01567 416 529 WRKY Transcription Factor Family AT5G45050 33.333 1.78e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01567 - - pvu:PHAVU_010G027900g 712.22