Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01565 ATGGAATTCACGCCTGCTTCATATGATGTGCTCATCAACTTTACAGGAGAAGACATCCGTAGGAAGTTCGTTTCTCATCTCGATTCTGCCCTCTCAACTGCTGGGCTCACCACTTTCTTTCACGAGGAGAATATAGTCAAAGCCATGCAGCTCCAAGATCTAACACAACCAAAAGAATTGTGTCGGGTAGCAATAGTTGTTTTCACTAAAACCTACGCTGAATCTGCTTGGTGTCTCCATGAGCTTCAAGAAATCATCAAATGGCAGGAAATTTATTGCCGACATGTTCTGCCCGTATATTACGAAATTCATCCATCTGATGTACGTCTTCAGAAGGGTAATTTTGGAAAAGCCTTGAAAGCAACTGCACAACAAACATTTTCAGGACAACAAGTGGAAGATGCCTTGTCCAGGTGGAGCCGCGCACTCACCAAAGCAGCAAATTTGTTTGGGTGGGATGAGAGCAATTACAGGAGTGATGCTGGACTAGTGGAGAAAATTGTTAAGAGCGTTCTTAATTTACCAGTCTTGGCTGCTACTAAATTTCCAGTTGGATTACAATACCATGCGGAAAACTTGATTCGATATATTAAAAATAACAATGTCAGTATCATAGGGATATGGGGAATGGAAGGAGTGGGTAAAACCACCATTGTCAAAGCCGTCTACAACCAAATTCATAGTACGTTCATGTATAAAAGTTTCATTGAAGATGTTGAAGAAATTTGTGGAAGAGGGCATTTTCAGTTCGAAAAACAACTTCTTTCAGATGTCCTAAAAACAAAGGTCGAGATAAAGAGCAGAGAGATCGGTGCAAGTATGATTCAGAAAAGACTTTCAGGAAGAAGGATGCTCATTGTACTTGATGGTGCGAATCAATTTCAGCGATTGAAATTTTTATGTGAAAATCGTAAATGGTGTGGTGATGGAACTGTGGTGTTAGGGTGGCTAAAATTTCTCAATCTAAGTCACTCCAAGTACTTGACGGAAACACCGGACTTTTCAGGACTACCAAGTCTTAAAAAGCTCATTCTCAAAGATTGTCCAAGTTTGAGCAAGGTACACCAATCCATAGGAGATCTCTGCAATCTTCTACTGATAAATTTGAAGGACTGTACAAGTCTTAGCAATCTCCCCAAAGAGGTATATAAGTTGAAATCTTTAAAAACTCTCATCCTGTCTGGTTGTTTAAAGATTGACATTTTGGAAGAAGATGTAGCGCAGATGGAATCCTTGATAACACTAATTACTGAATATAAAGCAGTGAAACAAGTGCCCTTTTCAATTGTAAGCTCAAAATGCATTGGATATGTATCCCTACGTGGATTTGAAGGATTGTCACACAATATTTATCCTTCTATCATTCGGTCTTGGATCTCACCAACAATGAATCACTTATCTTATATTCGTCCGTGTTGCATGGATTTGGACAATAATAATTGGGGTGACCTTAAGCCAATGCTGAGCAGCCTTGCCAATCTTCGAAGTGTTTTGGTTCAATGCGACACGGAGTTTCAACTATCTAAGCAAGTAAAAGCAATTCTTGTTGAATACGGTGTACATTTTACGGAGTTAAGGATTTCAAACCATCTATTGAGGTTTTCTTTGATCGGTGTTGGATGTTACAATGAATTCTTCAACACTCTCAGCGAGAGTATATCTGAGGGATTGGCAAGGAGTGAATCTTCTTATGTTTGTCTTCCAGGTGACAACCATCCTCATTGGTTGGCCCATGTGGGTGGGCGACATTCAGTTCATTTCACTGTGCCTAAGGACTGTGACTTGAAGGGAATGGTTTTGTGTGTTGTTTATTTATCAACCCCTGAGAATATGGCAACTGAATGTCTTGCAAGTGTCTTAATTGTTAACTACACAAAGTGCACATTCCACATACACAAGCATGGCACAACAATTTCCTTTAACGATATAGACTGGGAGGGCATAATATCAAATTTAAAATCTGGGGACAAGGTGGAGATTTTTGTGACTCTTGCTCATGGATTGGTGGTCAAGAACACAGCTGTCTATCTGATATATGGTGAATCAAAGAAAAATACCCTCCATAAATTCATAAAAAAAAAGTTTGATGTGTGA 2094 0.3945 MEFTPASYDVLINFTGEDIRRKFVSHLDSALSTAGLTTFFHEENIVKAMQLQDLTQPKELCRVAIVVFTKTYAESAWCLHELQEIIKWQEIYCRHVLPVYYEIHPSDVRLQKGNFGKALKATAQQTFSGQQVEDALSRWSRALTKAANLFGWDESNYRSDAGLVEKIVKSVLNLPVLAATKFPVGLQYHAENLIRYIKNNNVSIIGIWGMEGVGKTTIVKAVYNQIHSTFMYKSFIEDVEEICGRGHFQFEKQLLSDVLKTKVEIKSREIGASMIQKRLSGRRMLIVLDGANQFQRLKFLCENRKWCGDGTVVLGWLKFLNLSHSKYLTETPDFSGLPSLKKLILKDCPSLSKVHQSIGDLCNLLLINLKDCTSLSNLPKEVYKLKSLKTLILSGCLKIDILEEDVAQMESLITLITEYKAVKQVPFSIVSSKCIGYVSLRGFEGLSHNIYPSIIRSWISPTMNHLSYIRPCCMDLDNNNWGDLKPMLSSLANLRSVLVQCDTEFQLSKQVKAILVEYGVHFTELRISNHLLRFSLIGVGCYNEFFNTLSESISEGLARSESSYVCLPGDNHPHWLAHVGGRHSVHFTVPKDCDLKGMVLCVVYLSTPENMATECLASVLIVNYTKCTFHIHKHGTTISFNDIDWEGIISNLKSGDKVEIFVTLAHGLVVKNTAVYLIYGESKKNTLHKFIKKKFDV 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01565 697 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 317 426 IPR044974 GO:0006952
Spst4g01565 697 Gene3D - 176 314 IPR027417 -
Spst4g01565 697 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 152 IPR035897 -
Spst4g01565 697 Gene3D - 5 175 IPR035897 -
Spst4g01565 697 Gene3D Ribonuclease Inhibitor 315 565 IPR032675 -
Spst4g01565 697 Pfam TIR domain 8 171 IPR000157 GO:0007165
Spst4g01565 697 SMART till_3 7 149 IPR000157 GO:0007165
Spst4g01565 697 ProSiteProfiles TIR domain profile. 6 175 IPR000157 GO:0007165
Spst4g01565 697 Pfam NB-ARC domain 188 289 IPR002182 GO:0043531
Spst4g01565 697 PRINTS Disease resistance protein signature 278 292 - -
Spst4g01565 697 PRINTS Disease resistance protein signature 204 219 - -
Spst4g01565 697 SUPERFAMILY L domain-like 314 498 - -
Spst4g01565 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 314 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01565 Spst-Chr4 54722065 54725210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01565 317 429 WRKY Transcription Factor Family AT4G12020 37.168 3.28e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01565 - - vra:106772917 649.047