Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01564 ATGCTTCGGTTTCTCTCAAGTGGGTCAAATATTTTTCAGTCTTTTCCACACTCAGCAATTATAAAAGCCCTGCGAGTGTTCACTTCCGCCACGTGTTCGACCATTTGCCTCACCCAAACCAAGGTTGAAGTTGAAGATGATAAAAGCAAATGGAGTGATGCTACTGAACTTTTGAGCAAATGGGGTTGCACTGATGATGATTTGGTGAGAATATTCTCGCGCTGCCCCTCGCTGCGTAATGCTGATCCCACGCTGGTTCAATCCAAACTGTCCCTTCTTACTGATTTGGGCTTGCGTGCTTCTCAACTTGTGAAGATTGTCAATTGTAGACCACGGTTTTTCCGGTCTCGGATTAACTCTAGTTTAGAAGAGAGGGTTGAACATCTTACATCATTGTTTGAGTCCAAGGAAGTGCTTCAGAAGGCCATTGTGAGAAACCCTTCACTGCTGCTATCGGAAGGTCGCTATAATGTTAAGGCCACAGTTGAGCTCTACGAGAAGTTGGGTGTTAAGAAAGGGGACTTGATTCAGATGCTGCTTTTGCGACCCACGGTTATTTCTAGGACTTCCTTTGACGCTGAGAAGCTGGAATATTTAAGCAAGATTGGGCTTACTATGGATTCAAAAATGTATAAATATGTGGTGACATTAATTGGAATCTCTCGCGTGGAAACGATCCGGGAGAAGGTGGCAAATTTAGCAAAGTTTGGGCTTTCTGAAGAGGAGATATTTGGTCTTGTGGGGAAGTCTCCTAATGTTTTGACATTGTCGACAGATAAGGTTCAGAGGAACATGACTTTCATTTTGGGCACGATGAAGCTTGACGCCAAATTGGTTCTAAAGCAGCCGTATCTCTTGTATGCCAATGTGGATACTGTTTTGAAGCCAAGAGTGCGTCTAGCATTGAAGATGCAAGATATGGTGGATTCGAAGTGGCAAATCATGGGACCAACAATAGTAAGTTTTCTTAGGATGTCAGAGAAGAGATTTTTGGACTTGTTTGTAAAATGCCATGGCGAGGATGTTGCCAATGAATTGATGGAATTCTATAAAAGGACAAAAGAGGTTAAGAGATTGGGAGTGTCATCAAAGAAGTGCAGTAGTAAGAGAGGATTCCCTTTCTGA 1125 0.4293 MLRFLSSGSNIFQSFPHSAIIKALRVFTSATCSTICLTQTKVEVEDDKSKWSDATELLSKWGCTDDDLVRIFSRCPSLRNADPTLVQSKLSLLTDLGLRASQLVKIVNCRPRFFRSRINSSLEERVEHLTSLFESKEVLQKAIVRNPSLLLSEGRYNVKATVELYEKLGVKKGDLIQMLLLRPTVISRTSFDAEKLEYLSKIGLTMDSKMYKYVVTLIGISRVETIREKVANLAKFGLSEEEIFGLVGKSPNVLTLSTDKVQRNMTFILGTMKLDAKLVLKQPYLLYANVDTVLKPRVRLALKMQDMVDSKWQIMGPTIVSFLRMSEKRFLDLFVKCHGEDVANELMEFYKRTKEVKRLGVSSKKCSSKRGFPF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01564 374 PANTHER CGI-12 PROTEIN-RELATED 47 338 IPR003690 GO:0003690|GO:0006355
Spst4g01564 374 FunFam Mitochondrial transcription termination factor family protein 122 344 - -
Spst4g01564 374 Gene3D Transcription termination factor 3, mitochondrial 135 351 IPR038538 -
Spst4g01564 374 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Spst4g01564 374 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Spst4g01564 374 SMART mt_12 69 99 IPR003690 GO:0003690|GO:0006355
Spst4g01564 374 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Spst4g01564 374 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Spst4g01564 374 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Spst4g01564 374 Pfam mTERF 56 150 IPR003690 GO:0003690|GO:0006355
Spst4g01564 374 Pfam mTERF 110 331 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst4g01564 mTERF 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01564 K15031 - gmx:100799629 610.527