Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01561 ATGAAGCTGGAACAACAGATGAGAGCAATAGCCAGGTCTAAGATTGAAATAATTGTTTTCTCCAAAACATACACTGAGTCTACTTGGTGTGTTCGTGAGCTTGAAAAAATCATTGAATGCTACAAAACTTTTGGTCAAATAGTTCTGCCCGTATATTACGAGATTGACCCACACGATATAGCTCGCCAGAAGGGTGATTTTGGAAAAGCGTTGAAAAAAGCTGCACAGAAAATTTATTCAGGAAAAGAACTGAAACATGCCTTGTCCAGGTGGAGACTGGCACTCACCAGAGCTGCTGGAATCACTGGTTGGGATGCCAGAAAGTTTCGGCATGATGCTGAACTTGTGAAGGATATTGTTGACCGTATTCAGATATTACTGGACTATAAATATTTGCCTATAGCTGAATATCCCGTTGGATTAGAGTCCCACGTGGAGAAGGTGATTGGATGTATTGAAAATCAATCCACCAATGTCTGTATCATAGGCATATGGGGGATGGGAGGATCGGGTAAAACACTCTTAGCAAAAGCCATCTATAATCGAATTTATCGTACATTCATTGATAGAGGCTATGTTACAGAGATACTAAATGGCTGTGGTCTACATGCTGATATTGGAATAACAGTTCTGATAGAACGTAGTCTCTTAAAAGTTGATAAGAACAACAAACTTCAAATGCACCCTTTATTGCGAGATATGGGAAGAGAAATTATTCGTGAAAGGTCTCCAGTGAAACTTGGGAACCGGAGTCGATTATGGTGTCGCGATGATGTAGAAGATGGGACACAAGCTACGGAGGGACTGTCCCTGAAACTACCTTTAACCATCAGAGATTGCTTCGAAGCTCATGCTTTCAAGACAATGGAGAGATTAAGACTGCTGCAACTGGATCATGTACATGTTTCTGGAAGTTATGAGTACTTTTCTAAACAACTCAGATGGATTTGTTGGCAATGGTTTCCTTCTAAATACATACCAAACAACTTTAACATGGAAAATGTAATTGCACTTGATTTAAAACATAGTCATCTTCGAATAGTTTGGAAACAATCCCAGGTTTTGAGCTCGCTAAAATTCCTTAATCTTAGTCACTCCTACAACTTGACAGAAACGCCTGACTTTTCAGGACTTCCAAGTCTTGAAGAGCTCATTCTCAAAGATTGTCCAAGTTTGTGCAAGATACACCAATCCATAGGAGATCTCTGCAATCTACTACTCATAAATTTGAAGGACTGTACAAGTTTAAGCAGTCTCCCGAGAGAGATATATAAGTTGAAATCTTTAAAAACTCTCGTCCTATCAGGTTGTTCCAATATTGACATTTTGGAAGAAGATATAGTGCAGATGAAATCCTTGATAACACTAATTACTGAAAATAAAGCAGTGAAACAAGTGCCCCTTTCAATTATAAGTTCAAAATGCATTGGATATATATCCCTACGTGGATTTGAAGGATTGTTACATATTTTTCCTTCTATCATTCGGTCTTGGAAGACACCAATAAGCAATCCCCTATCTTATACCCATCCGTTTGGCATGGATATGGAGAATAATAATTGGCGTTACCTTTCGCCATTTTTTACCGGCCTTGCAAATCTTCGAAGTGTTTTGGTTCAATGTGACACGGAGTTTCAACTATCTACGCAAGTGCAAACAATTCGTGTCGAATACGGTGTAAATTATACAGAATTAAGAATTTCAGAGCATCACTTGAGGTTTTCTTTGATTGGTGTTGGAGGTTACGACAAGTTCTTCAACACTCTCAGCAATAGCATATCTGAGGAAATGGCAAGGTGTGAGTCTTGTGATATTTGTCTTCCAGGTGACAACCATCCTTATTGGTTCGGCCATGTGGGTGAGGGACATTCAGTTTTTTTCACTCTGCCTCAGGACTGTCACGTCAAGGGAATGGCTTTGTGTGTTGTTTATTCATCAACCCCTGACATCATAGCAACTGAATGTCTTAAAAGTGTCTTAATTGTTAACTACACAAAGTTCACATTCCAGATACACAAGCATGGCACAATAATTTCTGATATAGATTGGCAGGGCATAATATCAAATTTAGGATCTGGGGGGGACAAGGTGGAGATTTTTGTGGCTTTTGGTGACGGATTAGTGGTCAAGAAAACAGCTGTCTATCTGATCTATAGTGAACCAAATGACTTTGAATTGGAGCCTTGGCGTGAGCCAGAGGAAAATGCCCTCTATAAATTCATAAAGAAAATTGTATTGTGTGAATGCTGGTAA 2253 0.3924 MKLEQQMRAIARSKIEIIVFSKTYTESTWCVRELEKIIECYKTFGQIVLPVYYEIDPHDIARQKGDFGKALKKAAQKIYSGKELKHALSRWRLALTRAAGITGWDARKFRHDAELVKDIVDRIQILLDYKYLPIAEYPVGLESHVEKVIGCIENQSTNVCIIGIWGMGGSGKTLLAKAIYNRIYRTFIDRGYVTEILNGCGLHADIGITVLIERSLLKVDKNNKLQMHPLLRDMGREIIRERSPVKLGNRSRLWCRDDVEDGTQATEGLSLKLPLTIRDCFEAHAFKTMERLRLLQLDHVHVSGSYEYFSKQLRWICWQWFPSKYIPNNFNMENVIALDLKHSHLRIVWKQSQVLSSLKFLNLSHSYNLTETPDFSGLPSLEELILKDCPSLCKIHQSIGDLCNLLLINLKDCTSLSSLPREIYKLKSLKTLVLSGCSNIDILEEDIVQMKSLITLITENKAVKQVPLSIISSKCIGYISLRGFEGLLHIFPSIIRSWKTPISNPLSYTHPFGMDMENNNWRYLSPFFTGLANLRSVLVQCDTEFQLSTQVQTIRVEYGVNYTELRISEHHLRFSLIGVGGYDKFFNTLSNSISEEMARCESCDICLPGDNHPYWFGHVGEGHSVFFTLPQDCHVKGMALCVVYSSTPDIIATECLKSVLIVNYTKFTFQIHKHGTIISDIDWQGIISNLGSGGDKVEIFVAFGDGLVVKKTAVYLIYSEPNDFELEPWREPEENALYKFIKKIVLCECW 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01561 750 ProSiteProfiles TIR domain profile. 1 127 IPR000157 GO:0007165
Spst4g01561 750 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 104 IPR035897 -
Spst4g01561 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 197 IPR027417 -
Spst4g01561 750 PRINTS Disease resistance protein signature 161 176 - -
Spst4g01561 750 PRINTS Disease resistance protein signature 424 440 - -
Spst4g01561 750 Pfam TIR domain 8 123 IPR000157 GO:0007165
Spst4g01561 750 Gene3D - 3 126 IPR035897 -
Spst4g01561 750 SUPERFAMILY L domain-like 272 538 - -
Spst4g01561 750 Gene3D - 127 269 IPR027417 -
Spst4g01561 750 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 195 462 IPR044974 GO:0006952
Spst4g01561 750 Pfam NB-ARC domain 142 182 IPR002182 GO:0043531
Spst4g01561 750 Gene3D Ribonuclease Inhibitor 270 573 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01561 Spst-Chr4 54690981 54694688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01561 188 470 WRKY Transcription Factor Family AT4G12020 33.443 8.30e-35 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01561 - - pvu:PHAVU_010G027900g 802.357