Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01560 ATGGAATTCGAGTCATTTTCTTCATCGCCAGATCCCGAATGGATGCACTCTTCATCGCCAGATCCCGAAAGGATGCACGACGTGTTCATCAATTTCAGGGGAGAAGACACCCGTATGAATTTCGTTTCTCATCTCCATGCTGCCCTCTCAAATGCTGGAGTCAACACCTTCCTTGACGAAGCAAACTTTCCGAAGGGAGTTGAGCTAAAACAGGGACTGTTACGAACGATTGAAAGGTCTCGCATATGTCTAGTTGTCTTCTCCAGAAACTACACTGAATCTTCTTGGTGTCTTGAAGAGTTGGAAAATATCATTGAATGTCACCAAACTTATGGCCATATAGTTTTGCCCATATTTTACCTTGTTACGCCATCCCAAGTTCGTCATCAAACTGGTGATTTTGGAAACACTTTGAAAGCATTTGCACGACAAAGATTGTGGGGAAAATCTGTGATGTTGAGGTGGAAAAACGTACTCACCGCAGCTACAAATTTTTCTGGTTGGGATGTCACCGATAACAGGAACCAGGCTCAATTAGTGAAGGAAATTGTTGAGGTGGTTATAAAGAAATTAGACAATACATCCATGTCTGTAACTGAATTTCCTGTTGGATTGGAATCCCGTATGCAAGAAGTGATTGGATTTATTGCGAACAAATCCTCCACAGTTTGCATTATAGGGATATGGGGAATGGGAGGATTGGGTAAAACTACCACAGCAAAAGTCATCTTCAATCAGATTCACCACAGAGGCTACGTTACGGAGATACTAAATGGCTGTGGACTACATGCTGATATTGGAATAGCAGTTCTCATAGAACGTAGCCTCATAAAAGTTGAAAAGAGCAATAAACTCGGAATCCATGATTTGCTACGAGACATGGGAAGAGAGATAATCCGGGAAAGCTCAACAAAGACACCAGGGAAGCGTAGTCGATTGTGGTTTCATGATGATGTAGTTGAAGTGTTGACAAAGAATACTGGGACAGAAGCTATTGAGGGATTGACACTGAAAATACAGTTAACCAGCACAGGTTGCTTCAATACTTCTGCTTTTAAGAAAATGCAGGGATTGAGACTATTGCATCTTGATCATGTAAAACTCAGTGAAGATTATGGGTATCTTCCCAAGCAGCTGAGATGGATCTATTGGAAAAGATTTCCTTTGAAATACATCCCAAACAATTTTTGTATGCAACGCGTAATTGCTATCGATTTAAAGTACAGTAATCTTAGACAAGTCTGGAAAGAACCCCAGGTTTTTCCGTGGTTGAAAATCCTCAATCTTAGTCATTCCAAGTTCTTGATAGAAACCCCTGACTTTTCAAAACTACCTAGTCTTGAAAAGCTCATTCTCAAAGATTGTCCAAGTTTGTGCAAGGTAGACCAATCCATAGGAGATCTCTGCAATCTACAACTCATAAATTTGGAGGACTGTACAAGCCTTAGCAGTCTCCCCATAGAAACATATAAGTTGAAATCTTTGAAAACTCTCATCCTATCTGGTTGTTCGAAAATAGAAAAATTGGAAGAAGATATAGGGCAGATGGAATCCCTGACAAGTCTAATTGCTAAAAATACTGCCGTGAAACAAGTTCCCTTTTCAATAGTGAGATCAAAAAGCGTTGGATATATATCCCTATGTGGATTTGAAGGATTATCACGTAATGTTTTTCCTTCTATCATTTTGTCTTGGATGTCACCAACAATGAATCCCCTATCTCATATTCATTCGTTTAGTGGCACTTCAGCATCTATTGTCTCCATGGATACGCAGAATAACGCTTTGGGTGATCCAGCACCAGTGCTTAGTAACCTTTCAAATCTTCGAAGTGTTTTGGTGCAATGTGACACAGAGTTTCAACTATCTACACAATTAGGAGCGGTTCTGGATGGCGTATATGATGTAAATATTTCTGGGTTAGAAATAACATCAGAAGCATCACAAACTTCAAAGCATTCCTTGAATTCCTACATGATTGGCATTGGAAGTTACGAAGAAGTTTTCAATACTCTCAGCAAGATCATATCTGAGGGATTGACAGCCAGTGAGTCTTGTGATGTTTTACTCCCAAGTGACAATTATCCTTCTTGGTTGGCCAAGACCGGTGAGGGACATTCAGTGTCTTTCATTATGCCCGAGGATTGTCGCATAAAGGGAATGGCTTTGTGTGTTGTGTATTGTTCAAACCCTGAAAACACGATGACTGAAAGCCTTGTTAGTGTCTTATTGGTTAATAACACAAAGTCCACAATCCATATATACAAGCATGAGACATTAATATCCTTTAAAGATGAAGATTGGGAGGGTTTAATGTCACACTTAGGATCTGGAGACACCGTGGAGATTTTTGTGACTTTTGGAGATGGATTGGTGGCCAAGAAAACAGCTCTGTATCTCATATGTGATGAATCAATTGAGAAGGAAATGGTCCCTTCTCGTAAGCGAAAGAAAGAGGCAGAGAACAATGCCTTTGTAAGATTTGTACGGAAAATTAGTCGTGGCATTAGGACTTTTGTTTTCTCTTTCTTTTCACTTCCTCACAGCAAAAAGAAGCCTTGTATATAG 2568 0.3995 MEFESFSSSPDPEWMHSSSPDPERMHDVFINFRGEDTRMNFVSHLHAALSNAGVNTFLDEANFPKGVELKQGLLRTIERSRICLVVFSRNYTESSWCLEELENIIECHQTYGHIVLPIFYLVTPSQVRHQTGDFGNTLKAFARQRLWGKSVMLRWKNVLTAATNFSGWDVTDNRNQAQLVKEIVEVVIKKLDNTSMSVTEFPVGLESRMQEVIGFIANKSSTVCIIGIWGMGGLGKTTTAKVIFNQIHHRGYVTEILNGCGLHADIGIAVLIERSLIKVEKSNKLGIHDLLRDMGREIIRESSTKTPGKRSRLWFHDDVVEVLTKNTGTEAIEGLTLKIQLTSTGCFNTSAFKKMQGLRLLHLDHVKLSEDYGYLPKQLRWIYWKRFPLKYIPNNFCMQRVIAIDLKYSNLRQVWKEPQVFPWLKILNLSHSKFLIETPDFSKLPSLEKLILKDCPSLCKVDQSIGDLCNLQLINLEDCTSLSSLPIETYKLKSLKTLILSGCSKIEKLEEDIGQMESLTSLIAKNTAVKQVPFSIVRSKSVGYISLCGFEGLSRNVFPSIILSWMSPTMNPLSHIHSFSGTSASIVSMDTQNNALGDPAPVLSNLSNLRSVLVQCDTEFQLSTQLGAVLDGVYDVNISGLEITSEASQTSKHSLNSYMIGIGSYEEVFNTLSKIISEGLTASESCDVLLPSDNYPSWLAKTGEGHSVSFIMPEDCRIKGMALCVVYCSNPENTMTESLVSVLLVNNTKSTIHIYKHETLISFKDEDWEGLMSHLGSGDTVEIFVTFGDGLVAKKTALYLICDESIEKEMVPSRKRKKEAENNAFVRFVRKISRGIRTFVFSFFSLPHSKKKPCI 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01560 855 PRINTS Disease resistance protein signature 225 240 - -
Spst4g01560 855 PRINTS Disease resistance protein signature 490 506 - -
Spst4g01560 855 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 249 IPR044974 GO:0006952
Spst4g01560 855 MobiDBLite consensus disorder prediction 1 15 - -
Spst4g01560 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 262 IPR027417 -
Spst4g01560 855 MobiDBLite consensus disorder prediction 1 20 - -
Spst4g01560 855 FunFam Disease resistance protein (TIR-NBS-LRR class) 22 193 - -
Spst4g01560 855 Gene3D - 196 314 IPR027417 -
Spst4g01560 855 ProSiteProfiles TIR domain profile. 24 191 IPR000157 GO:0007165
Spst4g01560 855 SUPERFAMILY L domain-like 307 617 - -
Spst4g01560 855 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 168 IPR035897 -
Spst4g01560 855 SMART till_3 25 165 IPR000157 GO:0007165
Spst4g01560 855 Pfam TIR domain 26 198 IPR000157 GO:0007165
Spst4g01560 855 Gene3D - 21 195 IPR035897 -
Spst4g01560 855 Gene3D Ribonuclease Inhibitor 347 660 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01560 Spst-Chr4 54653382 54664321 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01560 243 536 WRKY Transcription Factor Family AT4G12020 33.548 1.72e-36 147