Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01558 ATGCCTTCCGCTTCATCATCCTCAAAATCTGAAACCCAATGGATATACGATGTGTTCATCAATTTTCGGGGGGAAGATACTCGTAAGAATTTCGTTTCTCATCTCTATTCCGCTCTTGCAAATGCAGGAGTCAACTCTTTTCTGGACGATGAGAAGCTCCCCAAGGGACAAGAGCTGAAAACAGAGCTGTTCCACGCAATAGAAGGGTCTCGAATTTCCATCGTTGTTTTTTCCGAAAACTACATTTACTCTACATGGTGTCTTGATGAACTCGTCAAAATCATGGAGTGCCATGCTTCTAGAGGTCAAGTGGTTTTGCCCGTATTTTACTTCATTAGCCATTGGTCTCTAAGTGACCTGAGGGATGTTTCTTTCGAAGTCATTTTCGATCAAGCTGGTGACATCCACAGGGAGAAACAATGGCAGAATGCACTGAGTAATGCAGCGCATTTATCAGGTTGGGATGTTTTAAATTACAGTTTAGCTGAACGGTTTGCTATGAACACTATGGCAGAAAGGCATAGGAGTCCAATTGTAAATGAAAACACTGTTGTGAAGGAAATTGTTAGTGAAGTTATGGAAATACTAGATAGAACATTCATGTCTATTACAGATTTTCCAGTTGGATTGGAATCTCGTGTGCAACATTGTATTGGCTTTCTACGAAAGCAAACAAGAGAAGCTTATATATTAGGGATTTGGGGAATGGGAGGGATTGGTAAAACAACCATAGCCAAAGCCATCTACAATGAACTTCGACATGAATTTAAATATATCCTTAAAACAGAAAAGATAAAGGTTTATAGCATTGATTGGGGAAAAGCTATGATCAAGGAAAGGCTTTGCACAAAAAAAGACAGAGGCTATGTCACAGAGATACTAAATGGTTGTGGACTTCATGCTGATATTGGAATAACAGTTCTGCTAGAAAGGAGCCTCATCAAAGTTGAAAAGAATAACAAACTTGGAATTCATGATTTGCTACGAGACATGGGAAGAGAAATAGTTCGTCAAAGTTCACCTCTAGAACCACAGAAGCGCAGTCGATTGTGGGTTCATGATGATGTAGTCGATATATTGACAGAACAAACTGGAACAGGAGTCATTGAGGGATTGGCTTTGAAGATGCAAAGAACCAGCAGAGTTTGTTTCGGTACTGAAGCATTTGAGAAAATGAAGAGACTGAGACTTTTACAACTTGATCATGTACAACTTGCTGGAGATTTTGGGAATCTTCCCAAACAACTGAGATGGGTTTATTGGAAAGCATTTTCATTGACATACATACCTGACAACTTTTATCAGGAGAATGTGGTTTCTATTGATATAAAATACAGTTATCTTAAACAAGTATGGAAGGAGCCACAGTTGCTGGAGAGGCTAAAATTCCTTAATCTTAGTCATTCCAAGCACTTATCAAAAACCCCAGATTTTTCAAAACTACCAAATCTTGAGAAGCTCATTCTCAAAGATTGTCCAAGCTTGTATGAAGTACACCATTCAATTGGAGATTTAAGTAACCTTCTTCTGTTAAATTTGAAGGATTGCACATGCCTTGGCAATCTTCCAATAATAATATATAAGTTAAAGTCATTACAAACCCTCATCCTTTCTGGTTGTTCAAAGATTGACAAGCTAGAAGAAGACATAGTGCAGATGGAATCTTTGACAACACTAATTGCAGACAATACTGGTCTAAAACAAGTGCCCTTTTCCATAGTAAGATCAAAAAGGATTGGATATGTATCCCTTTGTGGATATGAAGGACTGGCACGTGATGTATTTCCTTCTCTCATATGGTCATGGATGTCACATACAGGAGGTCTTTCAGCCTGTACTCAACCATTTGGGATCATTCCAACATCTATAGTCTCCATGGATTTACAGGACAGTAATTTGGTTAATCTATTATCAAATCTCAGGGAATTTTCAAAACTTCGAAGTATTTGTGTGCAATGTGAATCAGATTTTCTAATAACACAAGAGCTAAGGATGATTCTGGATGAGTTATGCAATGTAAATTTTTCTGAATCAGAAAACGCATATTTATCACAAATTTCAGAAATGTCTATGGTATCACATTTGATTGGAATGGGAAGCTACCACCAAGTCTTCGATATGCTTAGCAATAGCATATCAGAGGTTCTTTCTCTCTTTTTCTGA 2163 0.3791 MPSASSSSKSETQWIYDVFINFRGEDTRKNFVSHLYSALANAGVNSFLDDEKLPKGQELKTELFHAIEGSRISIVVFSENYIYSTWCLDELVKIMECHASRGQVVLPVFYFISHWSLSDLRDVSFEVIFDQAGDIHREKQWQNALSNAAHLSGWDVLNYSLAERFAMNTMAERHRSPIVNENTVVKEIVSEVMEILDRTFMSITDFPVGLESRVQHCIGFLRKQTREAYILGIWGMGGIGKTTIAKAIYNELRHEFKYILKTEKIKVYSIDWGKAMIKERLCTKKDRGYVTEILNGCGLHADIGITVLLERSLIKVEKNNKLGIHDLLRDMGREIVRQSSPLEPQKRSRLWVHDDVVDILTEQTGTGVIEGLALKMQRTSRVCFGTEAFEKMKRLRLLQLDHVQLAGDFGNLPKQLRWVYWKAFSLTYIPDNFYQENVVSIDIKYSYLKQVWKEPQLLERLKFLNLSHSKHLSKTPDFSKLPNLEKLILKDCPSLYEVHHSIGDLSNLLLLNLKDCTCLGNLPIIIYKLKSLQTLILSGCSKIDKLEEDIVQMESLTTLIADNTGLKQVPFSIVRSKRIGYVSLCGYEGLARDVFPSLIWSWMSHTGGLSACTQPFGIIPTSIVSMDLQDSNLVNLLSNLREFSKLRSICVQCESDFLITQELRMILDELCNVNFSESENAYLSQISEMSMVSHLIGMGSYHQVFDMLSNSISEVLSLFF 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01558 720 Pfam NB-ARC domain 212 261 IPR002182 GO:0043531
Spst4g01558 720 Pfam TIR domain 16 193 IPR000157 GO:0007165
Spst4g01558 720 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
Spst4g01558 720 SUPERFAMILY L domain-like 340 677 - -
Spst4g01558 720 ProSiteProfiles TIR domain profile. 14 161 IPR000157 GO:0007165
Spst4g01558 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 285 IPR027417 -
Spst4g01558 720 Gene3D - 9 198 IPR035897 -
Spst4g01558 720 PRINTS Disease resistance protein signature 230 245 - -
Spst4g01558 720 PRINTS Disease resistance protein signature 527 543 - -
Spst4g01558 720 SMART till_3 15 151 IPR000157 GO:0007165
Spst4g01558 720 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 282 IPR044974 GO:0006952
Spst4g01558 720 SUPERFAMILY "Winged helix" DNA-binding domain 290 360 IPR036390 -
Spst4g01558 720 Gene3D Ribonuclease Inhibitor 369 717 IPR032675 -
Spst4g01558 720 Gene3D - 199 359 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01558 Spst-Chr4 54637706 54641191 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01558 286 573 WRKY Transcription Factor Family AT4G12020 34.868 6.61e-39 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01558 - - vra:106773318 731.865