Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01555 ATGGAATTCGACTCTTCATCATCCAAACTCCAACGGATGTACAATGTGCTCATCAACTTTAATGGAGAAGACATCCGTAGGAAATTTGTTTCTCATCTCGATTTCTCACTCTCAAGAGCTGGATTCACCACTTTCCTTCACGAGGAGAATGTATTGAAGGGAATGCAACTCCAAGAACAACAAACACAAGCAAAAGAAATGTGTCTGGTAGCAATAGTTCTTTTCACCAAAACCTATGCTGAATCTGCTTGGTGTCTTCATGAGCTTCAACAGATCATTAAATGCCACGAAACTTGTTGCCAACATGTTCTGCCCGTATATTACGAAATTCAGCCATCAGATGTACGTCTTCAGAAAGGTGATTTTGGAAAAGCCTTGAAAGCAACTGCACAACAAACATTTTCAGGACAACAAGTGGAATATGCCTTGTACAGGTGGAGTCGGGCACTCACCAAAGCTGCAAATTTCTTTGGTTGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCGTTCTTAATTTACCAATCTTGTCTACTACTAAATTTCCAGTTGGATTACAATCCCACGTGGAAAATGTAACTCGTATGATTGAAAATAAAGCCAGCGAAGTCAGTATCATAGGCATATGGGGAATGGGAGGATTGGGTAAGACGACGATTGTCAAAGCCATCTACAACCAAATTCATGAGATACTAAATGGTTGTGGACTAAATGCTGGTATTGGAATAAAAATTCTCATAAAGCGAAATCTCATAAAAGTTGAAAAAAACAATAAACTGGGAATGCATCCTTTGCTTCAAGTGATGGGGAGAGAAATTATTCTTCAAAGTTCAACACAAGAATTTGAGAAGCGCTACCGACTGTGCTTTCCGGGCGATTTAAAATGTGTAGTGACAAGGAATGTGAGAAGAGAAGTTATTCAGGGATTGGTTCTCAAATCACCATTAACCAACACATCCTGGTCGAAAATTCCTGCTTTCAATGTAATGAATACGTTGACAGTGTGGGACGATATCTATGAAGAACTCACCGGTGACTATCCGAATCTTTCTAAGCAACTGAGGTGGATCTGTCATCGATGGTTTCCTTTAAAATACATACCTGAAAACTATGATATGGAAGGTGTAATTGCGATTGATTTGAAATGGAGTAATCTTAGACTAGTCTGGAAAGAACCACGGGTTTTAGGGTTGCTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTGACAGAAACCCCTGACTTTTCAGGACTACCAAGTCTTGAACAGCTCATTCTCAAAGATTGTCCAAGATTGTGCAAAGTACACCAATCCATTGGAGATCTCTGCAACCTACTCCTCATAAATTTGAAGGACTGTACAAGTCTAAGAAATCTCCCGAGAGAGGTATATAAGTTGAAATCTTTAAAAACTCTCATTCTATCTGGTTGCTCGAAGATTGACATTTGGGAAGATGATGTAGCGCAGATGGAATCCTTGATAACACTAATTGCTGAAAATAAAGCTGTGAAACAAGTGCCCCTTTCAATTGTAAGCTCAAAATGCATTGGATATATATCCCTACGAGGATTTGAAGGATCGTCACATAATCTTTTTCCTTCGATACTTCGGTCTTGGATACCACCAATGAATCCCCTATGTGATTTGCATCCATTTTCCATAGATATGGAGGATAATAGTTCGGGTGATCTAGTGCCATTTCTTAGCAGCCTTGCAAATCTGCGATGTGTTTTGGTGCAATGTGACACGGAGTTTCAACTACGTAAGCAAGTAGAAGCAATTCTGGTCAAACACGGTATAAATTTTACAGAATTAGGGGTTTCAAAGCATCACTTGAGGTCTTTTTTGATTGGTGTTGGAAGTTACAATGAATTCTTCAACATTCTCAGCAACAGCATCTTTGAGGGATTGGCAAGCAGTGAGTCTTGTGATGTTTCTCTTCCAGATGACAACCGTCCTTATTGGTTAGCCCATGTGGGTGAAGGACATTCAGTTTATTTCACTCTGCCTCAGGACTGTTACGTCAAGGGAATGGCTTTGTGTGTAGTTTATTTATCACCCCCAGAAATCATGGAAACTGAATGTCTTACAAGTGTCTTAATTGTTAACTACACAAAGTGCACATTCCAGATACACAAGCATGGCACAGTAATTTGCTTTAATGACATAGATTGGGAGGGCATAATATCAAATTTAGGATCTGGAGACAAGGTGGAGATTTTTGTGACTCTTGCTCATGGATTCGTGGTCAAGAACACAGCTGTCTACCTGATGTGCAATGAACCAAATAACTCGGAAATGGAGCCTTGCAAGCAGCCCAAGGAAAATGCCCCAAATAAATTCATAAAAAAAATTGTAATGTGTGACTTCAAGTTATTGCTCTTCTTTAAGAACAGAAAATGA 2427 0.3939 MEFDSSSSKLQRMYNVLINFNGEDIRRKFVSHLDFSLSRAGFTTFLHEENVLKGMQLQEQQTQAKEMCLVAIVLFTKTYAESAWCLHELQQIIKCHETCCQHVLPVYYEIQPSDVRLQKGDFGKALKATAQQTFSGQQVEYALYRWSRALTKAANFFGWDESNYRSDAELVDKIVKSVLNLPILSTTKFPVGLQSHVENVTRMIENKASEVSIIGIWGMGGLGKTTIVKAIYNQIHEILNGCGLNAGIGIKILIKRNLIKVEKNNKLGMHPLLQVMGREIILQSSTQEFEKRYRLCFPGDLKCVVTRNVRREVIQGLVLKSPLTNTSWSKIPAFNVMNTLTVWDDIYEELTGDYPNLSKQLRWICHRWFPLKYIPENYDMEGVIAIDLKWSNLRLVWKEPRVLGLLKFLNLSHSKYLTETPDFSGLPSLEQLILKDCPRLCKVHQSIGDLCNLLLINLKDCTSLRNLPREVYKLKSLKTLILSGCSKIDIWEDDVAQMESLITLIAENKAVKQVPLSIVSSKCIGYISLRGFEGSSHNLFPSILRSWIPPMNPLCDLHPFSIDMEDNSSGDLVPFLSSLANLRCVLVQCDTEFQLRKQVEAILVKHGINFTELGVSKHHLRSFLIGVGSYNEFFNILSNSIFEGLASSESCDVSLPDDNRPYWLAHVGEGHSVYFTLPQDCYVKGMALCVVYLSPPEIMETECLTSVLIVNYTKCTFQIHKHGTVICFNDIDWEGIISNLGSGDKVEIFVTLAHGFVVKNTAVYLMCNEPNNSEMEPCKQPKENAPNKFIKKIVMCDFKLLLFFKNRK 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01555 808 PRINTS Disease resistance protein signature 213 228 - -
Spst4g01555 808 PRINTS Disease resistance protein signature 472 488 - -
Spst4g01555 808 SMART till_3 13 156 IPR000157 GO:0007165
Spst4g01555 808 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 237 IPR044974 GO:0006952
Spst4g01555 808 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 159 IPR035897 -
Spst4g01555 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 238 IPR027417 -
Spst4g01555 808 Gene3D - 178 243 IPR027417 -
Spst4g01555 808 ProSiteProfiles TIR domain profile. 12 182 IPR000157 GO:0007165
Spst4g01555 808 SUPERFAMILY L domain-like 321 586 - -
Spst4g01555 808 Gene3D Ribonuclease Inhibitor 317 610 IPR032675 -
Spst4g01555 808 Pfam NB-ARC domain 195 238 IPR002182 GO:0043531
Spst4g01555 808 Pfam TIR domain 14 185 IPR000157 GO:0007165
Spst4g01555 808 Gene3D - 6 177 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01555 Spst-Chr4 54618224 54623097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01555 233 488 WRKY Transcription Factor Family AT4G12020 30.037 3.73e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01555 - - pvu:PHAVU_010G027900g 717.613