Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01554 ATGAAGATGGAAGAACACATGCAAACAATAGCAGGGTCTAAGATCGCAGTAATTATTTTATCCGAAACATACACTGAGTCTACTTGGTGTCTTCGTGAGCTTGAAAAAATCATTGAATGCTACAAAACTTTTGATCAAATAGTTCTGCCCGTATTTTACGAGATTGACCCACAAGATATCGCTCGTCAGAAGGGTGATTTCGGAAAAGCGTTGGAAGAAGCTGCACAGAAAAGTTATTCAGGAGAAGAACTGAAACATGCCTTGTCCAGGTGGAGACTGGCACTCACCGAAGTTGCAGGTATCAGTGGTTGGGATGTCAGCAAGTTTGGGCATGATGCTGAACTTGTGAAGGATATTGTTGACCGTATTCAGACGTTACTGGACTACAAATACTTGTCTACTGTTCAATATCCCGTTGGATTAGAGTCCCACGTGGAGAAGGTGATTGGATGTATTGAAAATCAATCCACCAATGTCTGTATCATAGGCATATGGGGAATGGGAGGATCGGACAGAGGCTATGTTACAGAGATACTAAATGGCTGTGGACTACATGCTGATATGGGAATAACAGTTCTGATAGAAAGTAGTCTCTTAAAAGTTGATAAGAACAACAAACTTCAAATGCACCCTTTGTTGCGAGATATGGGAAGAGAAATTATTCGTGAAAGGTCTCCAGTGAATCTTGGGAACCGGAGTCGATTATGGTTTCACGACGATGTAAAAGGTGTACTCACAAAGAATACTGGGACAGAAGCTACGGAGGGATTGTCCCTGAAACTGCCTTTAACCATCAGAGATCGCTTCGAAGTTCATGCTTTCGAGAAAATGGAGAGATTAAGACTGCTGCAACTGGATCATGTACAAGTTGCTGGGAGTTATGAGTACTTTCCTAAACAACTGAGATGGATTTGTTGGGCACGGTTTCCTTCTAAATACATACCAAACAACTTTAATATGGAAAATGTAATTGCACTTGATTTAAAACATAGTCATCTTCGAATCGTTTGGAAACAATCCCAGGTTTTGAGCTCACTAAAATTCCTTGATCTTAGTCATTCCCACTTCTTGATGGAAACGCCTGACTTTTCAGGACTACCAAGTCTTGAAGAGCTCATTCTCAAAGATTGTCCAAGTTTGTGCAAGATACACCAATCCATAGGAGATCTCTGCAATCTACTACTCATAAATTTGAAGGACTGTACAAGTTTAAGCAATCTACCGAGAGAGATATATAAGTTGAAATCTTTAAACACTCTCATCCTATCAGGTTGTCTGAAGATTGACATTTTGGAAGAAGATATAGAGCAGATGGAATCCTTGATAACACTGATTGCTGAAAATAAAGCAGTGAAACAAGTGCCCTTTTCAATTGTAAGTTCAAAATCCATTGGATATATATCCCTGCGTGGATTTGAAAGATTGTCAGATAATATTTTTCCTTCTATTATTCGGTCTTGGATGCCACCAACAATCAATCCTCTATCTTTTATCCATCCGTCTTGCATGGGTAATAATTGGCGTGACCTTGCGCCATTGTTTAGCGATCTCGGAAATCTTCGAAGTGTTTTGGTTCAATGTGACACGGAATTTCAACTATCTACGCAAGTACAAACAATTCGTGTTGAATACGGTGTAAATTATACAGAATTAAGAATTTCAGAGCATCACTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACGACAAGTTCTTCAACACTCTCAACAAAAGCATATCCGAGGTTCCTTCTCGCTTTTACCTCTGTGGATTGGCAAGGAGTGAGTGTTGTGATATTTGTCTTCCAGGTGACAACCATCCTTATTGGTTGGGCCATGTGGGTGAGGGACATTCAGTTTTTTTCACTGTGCCTCAGGACTGTCACGTCAAGGGAATGGCTTTGTGTGTTGTTTATTCATCAACCCCTGACATCATGGCAACTGAATGTCTTAAAAGTGTCTTAATTGTTAACTACACAAAGTTCACATTCCAGATACACAAGCATGGCACAATAATTACTGATATGGATTGGGAGGGCATAATATCAAATTTAGGATCTGGGGACAAGGTGGAGATTTTTGTGACTTTTGGTCAGGGATTGGTGGTCAAGAAAACAGCTGTCTATCTGATCTATGGTGAATCAAATGACTTTGAAATGGAGCCTTGCTGTGAGCAGAAAAATGCCCTCTATAAATTTATAAAGAAAATTGTAGTGTGTGACTGCTGGTAA 2229 0.3984 MKMEEHMQTIAGSKIAVIILSETYTESTWCLRELEKIIECYKTFDQIVLPVFYEIDPQDIARQKGDFGKALEEAAQKSYSGEELKHALSRWRLALTEVAGISGWDVSKFGHDAELVKDIVDRIQTLLDYKYLSTVQYPVGLESHVEKVIGCIENQSTNVCIIGIWGMGGSDRGYVTEILNGCGLHADMGITVLIESSLLKVDKNNKLQMHPLLRDMGREIIRERSPVNLGNRSRLWFHDDVKGVLTKNTGTEATEGLSLKLPLTIRDRFEVHAFEKMERLRLLQLDHVQVAGSYEYFPKQLRWICWARFPSKYIPNNFNMENVIALDLKHSHLRIVWKQSQVLSSLKFLDLSHSHFLMETPDFSGLPSLEELILKDCPSLCKIHQSIGDLCNLLLINLKDCTSLSNLPREIYKLKSLNTLILSGCLKIDILEEDIEQMESLITLIAENKAVKQVPFSIVSSKSIGYISLRGFERLSDNIFPSIIRSWMPPTINPLSFIHPSCMGNNWRDLAPLFSDLGNLRSVLVQCDTEFQLSTQVQTIRVEYGVNYTELRISEHHLRFSLIGVGSYDKFFNTLNKSISEVPSRFYLCGLARSECCDICLPGDNHPYWLGHVGEGHSVFFTVPQDCHVKGMALCVVYSSTPDIMATECLKSVLIVNYTKFTFQIHKHGTIITDMDWEGIISNLGSGDKVEIFVTFGQGLVVKKTAVYLIYGESNDFEMEPCCEQKNALYKFIKKIVVCDCW 742
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01554 742 Pfam TIR domain 8 123 IPR000157 GO:0007165
Spst4g01554 742 SMART till_3 1 101 IPR000157 GO:0007165
Spst4g01554 742 Gene3D Ribonuclease Inhibitor 262 553 IPR032675 -
Spst4g01554 742 Gene3D - 3 134 IPR035897 -
Spst4g01554 742 SUPERFAMILY L domain-like 224 526 - -
Spst4g01554 742 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 104 IPR035897 -
Spst4g01554 742 ProSiteProfiles TIR domain profile. 1 127 IPR000157 GO:0007165
Spst4g01554 742 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 178 476 IPR044974 GO:0006952
Spst4g01554 742 Coils Coil 428 448 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst4g01554 Spst-Chr4 54577812 54581507 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01554 171 478 WRKY Transcription Factor Family AT4G12020 32.471 2.48e-37 149
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01554 - - pvu:PHAVU_010G027900g 823.928