Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01551 ATGTCTTCTTCCTCATCGAAACCCCAATGGACCTACGACGTCTTCATCAACTTCAGAGGAGGAGACACTCGCAGGGACTTCGTCTCCCATCTCTACTACGCCCTATCTAACGCCGGCGTCAACACTTTCTTCGATGAGGAGAATCTGCTCAAGGGAACGCCGCTAGAGGAGCTTACGCGAGCAATCGAAGGCTCTCAGATCGCGATCGTTGTTTTTTCCGAAACTTACTCCGAGTCCACCTGGTGCCTCACAGAGCTTGAGAAAATCATCGATTGCCACGAATCCTACGGCCAAATCGTCGTGCCCATATTCTACGGCGTCGAAGCGTCCGTCCTACGCAATCCGAGGGGTCGTTTTGGAAAAGCTTTGGAAGTTGCCGCGCAGAAGAAATTTTCCGCTGATTACAGGGAGTATGGGTTGTCGAGGTGGAAAAACGCGCTCAACAAAGCTTCAAATTTATCTGGTTGGGACCTGAAGAATCACAGGAATACGGCTAAACTAGTGAAAGACATTGTTGAGGACATACTGACAAAACTAGACTACGCACTCTTGTCTATAACTGAATTTCCTGTTGGAGTGGAATCCCGTGTGCAACAAGTGATTGAAATTATAGAAAATCAATCTGCCAAGGTCTATATCATAGGAATATGGGGAATGGGAGGATCTGGCAAAACTACCATTGCCAAAGCCATCTACAATCAAATTCATCATAGAGCCTATGTTACAGAGATACTAAATGGTTGTGGGCTACATGCTGATATTGGAATAACAGTTCTAATAGAGCGTAGTCTCTTAAAAGTTGAAAAGAACAACAAACTCGGAATGCACCAATTGCTTCGGGACATGGGGAGGGAGATAATTTGTGAGAGTTCAAGAAAGGAACCTGGGAAGCGAAGTCGATTGTGGTTTCATGAGGATGTAATTGATGTATTGACAAATAATAGTGGAACAGAAACTATTGAGGGATTGACTATGAAATTGCATTTCACCGGCAAAGATTGCTTTAAAGCTTATGCTTTTGATGAAATGAAGAGATTGAAACTGTTGCAACTTGATCATGTACAACTAACTGGAAATTTTGGTTATCTTTCTAAGCAACTGAGATGGATCTGTTGGCAAGGGTTTCCTTCAAAATACATACCTAAAAAATTTTATATGGAAGGTGCAATTGTGATTGATTTAAAACATAGTAATCTTCAGGTTTTCTGGAAAGAACCTCAGGTTTTGGGGAGGCTAAAAATCCTCAATCTTAGTCATTCCAAGTACTTGACTGTAACCCCTGACTTTTCAAAACTACCAAATCTTGAAAAGCTCGTTCTCAAAGATTGCCCACGATTGTGCAAGGTACACAAGTCCATTGGAGACCTCTGCAATCTTCTTCTGATAAATTTGAAGGACTGCAAAAGTCTTAGCAATCTGCCAAGGGGAGCTTATAAGTTGAAATCTGTAAAAACACTCATCCTTTCGGGTTGTTCAAAGATAGACAAATTAGAAGAAGATGTAGTGCAGATGGAATCCTTGACCACTCTAATTGCTGAAAATACTGCTATGAAACAAGTGCCCTTTTCAATAGTAAAGTCAAAAAGCATTGGTTATATATCCCTATGTGGATATGAAGGATTTTCACGTAATGTTTTTCCTTCTATCATTCGGTCTTGGATGTCACCAACAATGAATCCGCTATCTTATATTCAGCCATTTTGTAGCACATCGTCATATCTAGTTTCCATGGATATGCAAAGTTATAATTTGGGTGATCTTGCACCAATGCTTAGCAGCCTTTCAAATCTACGAAGTGTTTTGGTGCAATGTGACACAGAGTCTCAAGTTTCTAAACAAGTAAGAAGAATTCTTGATGACAATTATGGTGTAAATTTTACACCATTTGAAACGACATCACAAACGTCAAATCATTACTTTAAGTCTTATTTGATTGGGATTGGAAGTTATCAAGAAGTCTTCAGTATTCTCAGTGATAGCATATCCGAGGGATTGGCAACTAGTGAGTATTGTGATGCTTTTCTCCCAGGTGCCAATGATCCTTTTTGGTTGGCCCATACGAGTGAGGGACATTCAGTGTATTTCTCTGTGCCTGACAATTGTCGCATGAAGGGAATGACTTTATGTGTAGTTTATTTATCAACCCCTGAAAGCACAGTAACTGAATATCTCATTAGTGTTTTAATGGTTAATTACACAAGGTGCACCATCCAGATATTCAAGCGAGAGACAGTATTTTCCTTTAATGATGAAGATTGGCAGGCCATAGTATCAAATTCAGGCCCTGGAGACAAGTTGGAGATTTTTGTGAATTTTGCGCATGGATTGGTGGTCAAGAAGACAGCTATCTATCTAATGTGTGATGAATCAATTGACAAGGAAAACAACCCGTCACCTGAGCCAAAGAAAGAACCAAAGAAAAATGTCTTTAAAAGATTCATCAAGAAAGTTGTAATGTAA 2460 0.402 MSSSSSKPQWTYDVFINFRGGDTRRDFVSHLYYALSNAGVNTFFDEENLLKGTPLEELTRAIEGSQIAIVVFSETYSESTWCLTELEKIIDCHESYGQIVVPIFYGVEASVLRNPRGRFGKALEVAAQKKFSADYREYGLSRWKNALNKASNLSGWDLKNHRNTAKLVKDIVEDILTKLDYALLSITEFPVGVESRVQQVIEIIENQSAKVYIIGIWGMGGSGKTTIAKAIYNQIHHRAYVTEILNGCGLHADIGITVLIERSLLKVEKNNKLGMHQLLRDMGREIICESSRKEPGKRSRLWFHEDVIDVLTNNSGTETIEGLTMKLHFTGKDCFKAYAFDEMKRLKLLQLDHVQLTGNFGYLSKQLRWICWQGFPSKYIPKKFYMEGAIVIDLKHSNLQVFWKEPQVLGRLKILNLSHSKYLTVTPDFSKLPNLEKLVLKDCPRLCKVHKSIGDLCNLLLINLKDCKSLSNLPRGAYKLKSVKTLILSGCSKIDKLEEDVVQMESLTTLIAENTAMKQVPFSIVKSKSIGYISLCGYEGFSRNVFPSIIRSWMSPTMNPLSYIQPFCSTSSYLVSMDMQSYNLGDLAPMLSSLSNLRSVLVQCDTESQVSKQVRRILDDNYGVNFTPFETTSQTSNHYFKSYLIGIGSYQEVFSILSDSISEGLATSEYCDAFLPGANDPFWLAHTSEGHSVYFSVPDNCRMKGMTLCVVYLSTPESTVTEYLISVLMVNYTRCTIQIFKRETVFSFNDEDWQAIVSNSGPGDKLEIFVNFAHGLVVKKTAIYLMCDESIDKENNPSPEPKKEPKKNVFKRFIKKVVM 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01551 819 Gene3D - 5 184 IPR035897 -
Spst4g01551 819 Pfam NB-ARC domain 194 235 IPR002182 GO:0043531
Spst4g01551 819 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 156 IPR035897 -
Spst4g01551 819 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 238 IPR044974 GO:0006952
Spst4g01551 819 Pfam TIR domain 12 185 IPR000157 GO:0007165
Spst4g01551 819 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 181 - -
Spst4g01551 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 247 IPR027417 -
Spst4g01551 819 SMART till_3 11 153 IPR000157 GO:0007165
Spst4g01551 819 SUPERFAMILY L domain-like 275 600 - -
Spst4g01551 819 ProSiteProfiles TIR domain profile. 10 179 IPR000157 GO:0007165
Spst4g01551 819 Gene3D Ribonuclease Inhibitor 334 617 IPR032675 -
Spst4g01551 819 PRINTS Disease resistance protein signature 478 494 - -
Spst4g01551 819 PRINTS Disease resistance protein signature 213 228 - -
Spst4g01551 819 Gene3D - 185 295 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01551 Spst-Chr4 54535281 54540250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01551 208 578 WRKY Transcription Factor Family AT4G12020 29.327 4.67e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01551 - - gmx:100815297 974.156