Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01548 ATGGAAAACCAGTACTTTCTGAATGCTGGGGTGTCACAGACACAGCACCCTCTTCACTTTGAACCTTCACCACCACCTTCTTCAGTGCCCTCTTGGCAATCACTCTCACCCACCATGGGAATTCAACCAACAGTTCTGAATTGTGCCTCTGAGCAAACCCAGGATTGCTTTTACAACCCCAATTGGGACAACTCAACAGATCATGGACTTCCTCACTTTGATTCCTCGGCACTGAGTTCAATGGTCTCATCCCCTGCAGGATCATCCAACCCCAGCAACAACAACAACAACATGTGCAATGAGAATTTCATCATCAGGGAATTGGTGGGGAAATTGGGAGCTACTGGGAGCTCTGATGAGATCCCACAACACTCTCCTCACCCGTTGGTTGTGGCATCTTCTTACATGAATAATGGGAGTAGCAGCCCCAACACCTCATGTTACACCACCCCTTTGAGTTCCCCTCCGAAGGTGAACTCTGTCCACAGTTTGGTGAATGAGAGGTTGGCAAATTTGGGAGGAAAGTCAATGGCTTTGAATTCCAGTGTGGCTGAATTCTCGGCTGACCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTTAATGATAGGAGTGTCCAATTGGGGGTGAACAACGGTGAATTGGCTCAGAGATCTACACCAGTAGTGGAAAATGGCGGAAAGTTATCTAGAATCTCAAGTAGTCCATTGCTCAAAACACTTGGATCTCAAATGGGTTCCCAAGAGAACAAGAATTCTGCAACTCAGGAGCAAGAGAAAATGGAAGTGGCCAATTCTCAAGAGGAATCTACAATATCCGAGCAAACACCAACTGGAGAAATTGGGATGAAAATTTGCCAAGATATGACGAGTTCCAGGAAAAGAAAAGCATCTTCCAAAGGAAAAACCAAAGAAAACTCTATTAATCCCACCATGGGAGTTGATGTAAGTGAGAATTCAAATTCAAAGCGTACCAAGCCAAATGAAGGTGAAGGAAATGAAAATGAGCCAATGAAGGCTGAGGAAGAGTCCAAAGCAGTGGAAGAGAAACAAAACAAAAGCAACTCAAAACCTCCTGAGCCACCAAAAGATTACATTCATGTAAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGCAAAGCACTTATGCTAGATGAAATTATAAACTATGTTCAGTCATTGCAGCGTCAAGTAGAGTTCCTGTCTATGAAGTTGGCTTCTGTTAACACAAGGATGGATCTAAGTATTGAGAGTCTTGTTTCAAAAGATGTATATCAGTCTAATAATTCTTTGGCACCAAACCCAAATCCAATATTCCCATTAGATTCCTCAGCACAAGCCTTTTATGGGCACCAGCCTCAGCAGAACCCAGTTATCCATAATAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCGTTAGATACTTCCTTGTGCCAAAATCTTGCCATGCAATTACCCCCCCTAAATGGGTTTAATGAAGGTGGCTCTCAGTTTCCATTAACATTCTGTGAGGATGATCTGCACACCATTGTGCAGATGGGATTTGGCCAAACTGCAAACTGGAAAACACCAATACAATCCCCAAGTTTCAACGGTTCAAATAATGTACCCCAGATGAAAGTTGAGCTCTGA 1749 0.4443 MENQYFLNAGVSQTQHPLHFEPSPPPSSVPSWQSLSPTMGIQPTVLNCASEQTQDCFYNPNWDNSTDHGLPHFDSSALSSMVSSPAGSSNPSNNNNNMCNENFIIRELVGKLGATGSSDEIPQHSPHPLVVASSYMNNGSSSPNTSCYTTPLSSPPKVNSVHSLVNERLANLGGKSMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSVQLGVNNGELAQRSTPVVENGGKLSRISSSPLLKTLGSQMGSQENKNSATQEQEKMEVANSQEESTISEQTPTGEIGMKICQDMTSSRKRKASSKGKTKENSINPTMGVDVSENSNSKRTKPNEGEGNENEPMKAEEESKAVEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIESLVSKDVYQSNNSLAPNPNPIFPLDSSAQAFYGHQPQQNPVIHNNIPNRTVTHCSVDPLDTSLCQNLAMQLPPLNGFNEGGSQFPLTFCEDDLHTIVQMGFGQTANWKTPIQSPSFNGSNNVPQMKVEL 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01548 582 MobiDBLite consensus disorder prediction 247 286 - -
Spst4g01548 582 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 380 430 IPR011598 GO:0046983
Spst4g01548 582 Coils Coil 427 447 - -
Spst4g01548 582 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 378 449 IPR036638 GO:0046983
Spst4g01548 582 SMART finulus 386 436 IPR011598 GO:0046983
Spst4g01548 582 MobiDBLite consensus disorder prediction 328 371 - -
Spst4g01548 582 Gene3D - 377 452 IPR036638 GO:0046983
Spst4g01548 582 MobiDBLite consensus disorder prediction 247 371 - -
Spst4g01548 582 Pfam Helix-loop-helix DNA-binding domain 384 431 IPR011598 GO:0046983
Spst4g01548 582 MobiDBLite consensus disorder prediction 76 97 - -
Spst4g01548 582 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 253 486 IPR024097 GO:0006355
Spst4g01548 582 CDD bHLH_AtBPE_like 370 455 - -
Spst4g01548 582 MobiDBLite consensus disorder prediction 309 327 - -
Spst4g01548 582 MobiDBLite consensus disorder prediction 12 33 - -
Spst4g01548 582 FunFam Basic helix-loop-helix transcription factor 377 449 - -
Spst4g01548 582 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01548 Spst-Chr4 54504807 54507510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01548 1 541 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 40.146 2.25e-99 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g01548 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01548 - - gmx:100801233 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03702 1 46825987 46828391 Spst4g01548 4 54504807 54507510 PCT