Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01544 ATGGACGAGGATTTCGACATGCCGGCGGCGGAGCCCATGAACGACGACTTCGACTTTGGCGGCGGTGGCGACGACCTCGACAATCTCGACAACCCCGTCCTCAAGGTTGGCGAGGAGAAGGAGATTGGGAAACAGGGCTTGAAGAAGAAACTCCTCAAGGAAGGTCAAGGATGGGACACTCCTGAAGCTGGTGACGAAGTTCAAGTTCACTACACTGGGACGTTGCTTGATGGTACTAAGTTTGATTCCAGCAGAGATAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAGGGCAAGTTATTAAAGGATGGGATCAAGGAATTATAACGATGAAGAAAGGTGAAAATGCCCTTTTCACCATCCCAGCTGAGCTAGCATATGGTGAATCTGGTTCTCCTCCAACTATTCCTCCCAATGCAACTCTTCAATTTGACGTGGAGCTGTTGTCTTGGACTAGTGTTAAGGACATATGTAAGGATGGAGGTTTATTTAAGAAGATAGTCGCTGAGGGGGATAAATGGGAGAACCCCAAGGATCTTGATGAAGTTTTAGTGAATTATGAAGCACGTCTTGAAGATGGGACTGTAGTAGCAAGATCTGATGGAGTGGAGTTCACAGTCAAAGATGGTTATTTTTGTCCTGCTTTGTCTAAGGCTGTTAAAACTATGAAGAAAGGAGAGAAAGTGATTCTGACTGTGAAGCCACAATATGGATTTGGTGAGAAAGGTAAGCCAGCACAAGGTGACGAAGGTGCAGTTCCACCAAATGCATCATTAGAGATTACTCTTGAGTTAGTTTCTTGGAAGACTGTGTCAGAAGTAACTAATGACAAGAAGGTTATTAAGAAGATCCTCAAAGAAGGGGAAGGATTTGAGCGTCCAAATGAGGGGGCAATTGTGAAATTGAAAGTAATTGGTAAGCTGCAAGATGGTACATTGTTTTTGAAGAAGGGTCATGATGATGAAGGGCAGCTGTTTGAATTCAAAACTGATGAGGAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTGAGGTGTCATTGTTAACTATTGCGCCTGAATATGCTTTTGGCTCATCCGAGTCTAAGCAGGAACTTGCAGTGGTTCCTCCCAACTCCACTTTGTATTATGAGGTTGAGCTAGTATCATTTGAGAAGGAGAAGGAGTCATGGGACATGAGCACACCAGAGAAGATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGAAATGCATTATTTAAAGCTGGTAAATATACAAGAGCTTCTAAAAGATATGAAAAGGCTGTAAAGTTCATAGAGTATGATACCTCCTTCAGTGAAGAAGAGAAGAAGAGCAGCAAGGCCTTGAAAGTTGCCTGTAATCTGAACGATGCAGCATGCAAGTTGAAGCTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGGTACTGGAACTTGAGAGCACTAACGTGAAGGCTCTCTATAGAAGGGCCCAGGCATATATTCAGTTGGCTGATTTAGACTTGGCTGAATTTGATATTAAGAAAGCTCTTGAGATTGACCCTGACAACAGGGAAGTCAAGCTTGAGTACAAGACCTTGAAGCAAAAGATGAAGGAATATAACAAAAAAGAGGCGCAGTTTTATGGAAATATTTTCAACAAACTGCATAAGCTAGATTCGCATGACAATAACAAAGCAGCGTCTACGGATGCCCAACCCATGAATATCGACAGCAAAGCATAA 1743 0.4303 MDEDFDMPAAEPMNDDFDFGGGGDDLDNLDNPVLKVGEEKEIGKQGLKKKLLKEGQGWDTPEAGDEVQVHYTGTLLDGTKFDSSRDRGTPFSFTLGQGQVIKGWDQGIITMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKIVAEGDKWENPKDLDEVLVNYEARLEDGTVVARSDGVEFTVKDGYFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAQGDEGAVPPNASLEITLELVSWKTVSEVTNDKKVIKKILKEGEGFERPNEGAIVKLKVIGKLQDGTLFLKKGHDDEGQLFEFKTDEEQVIDGLDRAVLTMKKGEVSLLTIAPEYAFGSSESKQELAVVPPNSTLYYEVELVSFEKEKESWDMSTPEKIEAAGKKKEEGNALFKAGKYTRASKRYEKAVKFIEYDTSFSEEEKKSSKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPDNREVKLEYKTLKQKMKEYNKKEAQFYGNIFNKLHKLDSHDNNKAASTDAQPMNIDSKA 580
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01544 580 SMART tpr_5 490 523 IPR019734 GO:0005515
Spst4g01544 580 SMART tpr_5 407 440 IPR019734 GO:0005515
Spst4g01544 580 SMART tpr_5 456 489 IPR019734 GO:0005515
Spst4g01544 580 Coils Coil 523 543 - -
Spst4g01544 580 Gene3D - 270 391 IPR046357 GO:0003755
Spst4g01544 580 ProSiteProfiles TPR repeat profile. 490 523 IPR019734 GO:0005515
Spst4g01544 580 FunFam Peptidylprolyl isomerase 37 155 - -
Spst4g01544 580 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 180 269 IPR001179 GO:0003755
Spst4g01544 580 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 297 390 IPR001179 GO:0003755
Spst4g01544 580 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 64 152 IPR001179 GO:0003755
Spst4g01544 580 SUPERFAMILY FKBP-like 40 166 - -
Spst4g01544 580 SUPERFAMILY FKBP-like 273 407 - -
Spst4g01544 580 Gene3D - 37 155 IPR046357 GO:0003755
Spst4g01544 580 Pfam Tetratricopeptide repeat 490 523 IPR001440 GO:0005515
Spst4g01544 580 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 293 387 IPR001179 GO:0003755
Spst4g01544 580 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 175 266 IPR001179 GO:0003755
Spst4g01544 580 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 60 149 IPR001179 GO:0003755
Spst4g01544 580 FunFam Peptidylprolyl isomerase 395 550 - -
Spst4g01544 580 MobiDBLite consensus disorder prediction 1 31 - -
Spst4g01544 580 FunFam Peptidylprolyl isomerase 156 269 - -
Spst4g01544 580 SUPERFAMILY TPR-like 396 554 IPR011990 GO:0005515
Spst4g01544 580 Gene3D Tetratricopeptide repeat domain 393 550 IPR011990 GO:0005515
Spst4g01544 580 FunFam Peptidylprolyl isomerase 270 392 - -
Spst4g01544 580 Gene3D - 156 269 IPR046357 GO:0003755
Spst4g01544 580 PANTHER PEPTIDYLPROLYL ISOMERASE 39 153 - -
Spst4g01544 580 SUPERFAMILY FKBP-like 156 271 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst4g01544 Spst-Chr4 54451053 54456452 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01544 34 564 Calmodulin-binding Proteins AT3G25230 82.486 0.0 892