Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01542 ATGGAACCTGACGGGATTGACGAACTCAAGCTACCACTGTTGCATACATCGGAAGCTGCTACCGCCCCTGTTAGGACCGTCACGTTCCAACTGAGCGACGTCAAGTGTTCTTCATGCGTGAATTCTGTCGAGGCCGTCGTCGGGAGCCTTAACGGCGTCAAAAGCGTCGCCGTTTCGCCGCTTGACGGTCGCGCCGCCATCAAGTTTGACCCTAAGTTGGTTACTGTGAAACAAATAAAAGAAAACATAGAGGATAGTGGGTTTGGAGTTGATGAGCTTCATGAGCAGGACATAGCAGTGTGCCGAGTGCGGATTAAAGGAATGGCATGCACAAGTTGCTCCGAGTCTGTTGAGAATGCCCTTCAAATCGTTGAAGGGGTGAAAAAGGCCATAGTTGGTCTCGCTTTGGAGGAGGCGAAAGTGCACTTTGATCCTAATCTCACTAATGTTAGCAAGATAATTGAGGCCATAGAAGATACAGGTTTTGGAGCTGATCTTATTAGCTCAGGGAATGATGCAAACAAAGTGTATCTAAAGCTTGAAGGTGTTGATTCCCCAGAAGATGTAAATTTAGTAATGTCTTCTCTTGAGTTAGCTGTCGGGGTGAACCATGTTGAGATGGATTTGTCAGAACATAAGGTCTCGGTTAGCTATGATCCAGATGTTACAGGTCCAAGGTCTCTCATTCACTGTATTCAGGGAGCTAGCTCTGGCCCCAAGAAGCATCAAGCAACCTTGTACTCTCCTTCGGGGCAAAGAGAAAGGGAAAAGGTGAATGAAATCCGTATGTATAGGGACCAATTTTTGTTCAGCTGCTTATTTTCTGTTCCCGTGTTTGTATTTGCCATGGTGCTTCCCATGCTTCCTCCTTATGGCAACTGGTTAAACTACAAGATCCACAATATGCTTACTCTTGGGCTGTTTTTAAGATGGATTCTTTGCACGCCTGTGCAGTTCATAATTGGCAAAAGGTTCTATGTGGGATCATATCATGCACTGAAGCGAAAATCTGCTAACATGGATGTGCTAGTTGCGCTAGGCACAAATGCTGCTTATTTTTACTCTCTATATATTTCAATAAAAGCACTGACTTCGGAAACATTTGAAGGACAAGATTTCTTTGAGACTAGTGCCATGTTGATATCCTTTATCCTATTAGGGAAGTATTTGGAAATTGTGGCTAAAGGGAAAACATCGGATGCTTTAGGAAAGCTAACTCAACTTGTTCCTGATAAAGCTTTTTTAGTAGAAATTGATACCGAAGGAAATATAATCACAGAGACAGAAATTGACACTCAACTTATACAAAAAAATGACATAATTAAGATTGTTCCTGGGGCCAAAATTCCTGTTGATGGTATTGTTATAAAAGGGCAAAGCTATGCAAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGATAAAAGCCCAGGAGACAAGGTTATCAGTGGAACCATCAATGAAAATGGATGCTTACTGGTAAATGCCACACATGTTGGATCAGACACTGCACTTTCTCAAATAGTTCAACTAGTTGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCTGACCATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTGTGGCGCTAATAACTTGGCTTGGATGGTTCATTCCTGGGGAAGCTGGTATTTTCCCTGAACATTGGATACCAACAGCAATGGATGCATTTGAGCTAGCTTTGCAGTTTGCTATTTCTGTGTTGGTTGTTGCTTGCCCATGTGCTCTGGGACTTGCAACACCAACAGCAGTCATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTGCTCATCAAGGGCGGAAATGCGCTGGAAAAGGCACACAAGGTAAAAGTTGTTGTGTTTGATAAGACTGGAACACTAACAGTTGGGAAGCCAGAGGTAGTTAGTGCAGTTCTGTTTTCTGAATTTTCTATGGAGGAGTTATGTGACATGACAATTGCTGTTGAGGCAAGTAGTGAGCACCCGATAGCAAAAGCTGTTGTGGTACATGCGAAAAGGCTGCGGCAGAAATTTGGTTCTTCCACAGATGAAGTCCCAGATGTGAATGATTTTGAGGTACACATGGGAGCTGGTGTAAGTGGAAAAGTTGGTGATAGAAAGGTTGTAGTTGGAAACAAGAGACTTATGCATGCTTGTAATATTCCAGTAGGTTCTAAGGTTGAGAAGTACATATCTGAAAATGAAAATCTAGCTAGAACTTGCATTTTAGTTTCAATTGATGGAAAGATTGCTGGAGCATTCTGCGTAACTGATCCTGTAAAGCCAGAGGCTAGACGTGTTGTATCTTTTCTCCACTCCATGGGCATTTCAAGTATCATAGTGACTGGTGATAACCGTGCTACCGCAATTGCTATAGCAAATGAAGTAGGTATTGATGAGGTTTTTGCTGAGACAGATCCTGTTGGCAAAGCTAACAAGGTGAAAGACTTGCAGATGAAAGGAATGACTGTGGCAATGGTAGGTGATGGAATAAATGACTCACCAGCCCTGGTTGCTGCTGATGTTGGCATGGCAATTGGTGCTGGAACTGACATTGCTATAGAAGCAGCTGACATAGTTCTGGTCAAAAGCAGTTTGGAAGATGTGATCACAGCCATAGATCTATCTAGAAAGACCATGTCACGCATCCGACTGAACTACATCTGGGCTCTTGGTTACAACATTCTAGGCATGCCAATTGCTGCAGGAGTCTTGTACCCTTTTGCTGGAATCAGATTGCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCGTCTCTTAGTGTGGTTTCATCCTCTCTCTTACTGCAGTTCTATAAAAAACCTCTTCATATAG 2856 0.4331 MEPDGIDELKLPLLHTSEAATAPVRTVTFQLSDVKCSSCVNSVEAVVGSLNGVKSVAVSPLDGRAAIKFDPKLVTVKQIKENIEDSGFGVDELHEQDIAVCRVRIKGMACTSCSESVENALQIVEGVKKAIVGLALEEAKVHFDPNLTNVSKIIEAIEDTGFGADLISSGNDANKVYLKLEGVDSPEDVNLVMSSLELAVGVNHVEMDLSEHKVSVSYDPDVTGPRSLIHCIQGASSGPKKHQATLYSPSGQREREKVNEIRMYRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYKIHNMLTLGLFLRWILCTPVQFIIGKRFYVGSYHALKRKSANMDVLVALGTNAAYFYSLYISIKALTSETFEGQDFFETSAMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAFLVEIDTEGNIITETEIDTQLIQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCLLVNATHVGSDTALSQIVQLVEAAQLAKAPVQKLADHISRVFVPIVVVVALITWLGWFIPGEAGIFPEHWIPTAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGNALEKAHKVKVVVFDKTGTLTVGKPEVVSAVLFSEFSMEELCDMTIAVEASSEHPIAKAVVVHAKRLRQKFGSSTDEVPDVNDFEVHMGAGVSGKVGDRKVVVGNKRLMHACNIPVGSKVEKYISENENLARTCILVSIDGKIAGAFCVTDPVKPEARRVVSFLHSMGISSIIVTGDNRATAIAIANEVGIDEVFAETDPVGKANKVKDLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFAGIRLPHGLLVLAWLLRLLVWFHPLSYCSSIKNLFI 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01542 951 CDD HMA 103 164 IPR006121 GO:0046872
Spst4g01542 951 Pfam E1-E2 ATPase 426 605 - -
Spst4g01542 951 ProSitePatterns Heavy-metal-associated domain. 31 59 IPR017969 GO:0046872
Spst4g01542 951 ProSitePatterns Heavy-metal-associated domain. 105 134 IPR017969 GO:0046872
Spst4g01542 951 Gene3D - 638 767 IPR023299 GO:0000166
Spst4g01542 951 CDD HMA 28 90 IPR006121 GO:0046872
Spst4g01542 951 Pfam haloacid dehalogenase-like hydrolase 623 848 - -
Spst4g01542 951 Pfam Heavy-metal-associated domain 28 88 IPR006121 GO:0046872
Spst4g01542 951 Pfam Heavy-metal-associated domain 102 162 IPR006121 GO:0046872
Spst4g01542 951 FunFam Probable copper-transporting ATPase HMA5 748 891 - -
Spst4g01542 951 CDD P-type_ATPase_Cu-like 268 921 - -
Spst4g01542 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 372 901 IPR023298 -
Spst4g01542 951 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 20 921 - -
Spst4g01542 951 ProSiteProfiles Heavy-metal-associated domain profile. 174 240 IPR006121 GO:0046872
Spst4g01542 951 SUPERFAMILY Calcium ATPase, transduction domain A 427 513 IPR008250 -
Spst4g01542 951 FunFam Copper-transporting ATPase 1, putative 395 517 - -
Spst4g01542 951 FunFam ATPase copper transporting beta 22 95 - -
Spst4g01542 951 SUPERFAMILY HAD-like 625 930 IPR036412 -
Spst4g01542 951 ProSiteProfiles Heavy-metal-associated domain profile. 99 165 IPR006121 GO:0046872
Spst4g01542 951 FunFam Copper-transporting ATPase HMA5 98 169 - -
Spst4g01542 951 SUPERFAMILY HMA, heavy metal-associated domain 22 93 IPR036163 GO:0046872
Spst4g01542 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 629 635 IPR018303 -
Spst4g01542 951 SFLD p-type atpase 609 886 IPR044492 -
Spst4g01542 951 Gene3D - 395 517 - -
Spst4g01542 951 Gene3D - 100 170 - -
Spst4g01542 951 SUPERFAMILY HMA, heavy metal-associated domain 96 170 IPR036163 GO:0046872
Spst4g01542 951 NCBIfam HAD-IC family P-type ATPase 380 911 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g01542 951 NCBIfam heavy metal translocating P-type ATPase 340 916 IPR027256 GO:0006812|GO:0016020|GO:0019829
Spst4g01542 951 SFLD Haloacid Dehalogenase 609 886 - -
Spst4g01542 951 Gene3D - 20 91 - -
Spst4g01542 951 PRINTS P-type cation-transporting ATPase superfamily signature 857 869 - -
Spst4g01542 951 PRINTS P-type cation-transporting ATPase superfamily signature 627 641 - -
Spst4g01542 951 PRINTS P-type cation-transporting ATPase superfamily signature 834 853 - -
Spst4g01542 951 PRINTS P-type cation-transporting ATPase superfamily signature 759 770 - -
Spst4g01542 951 PRINTS P-type cation-transporting ATPase superfamily signature 781 791 - -
Spst4g01542 951 PRINTS P-type cation-transporting ATPase superfamily signature 463 477 - -
Spst4g01542 951 ProSiteProfiles Heavy-metal-associated domain profile. 25 91 IPR006121 GO:0046872
Spst4g01542 951 SUPERFAMILY HMA, heavy metal-associated domain 170 236 IPR036163 GO:0046872
Spst4g01542 951 NCBIfam copper ion binding protein 103 163 IPR006122 GO:0005507
Spst4g01542 951 NCBIfam copper ion binding protein 27 90 IPR006122 GO:0005507
Spst4g01542 951 Gene3D - 618 884 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01542 Spst-Chr4 54427801 54435525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01542 23 921 Primary Pumps ATPases AT1G63440 57.017 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01542 K17686 - gmx:100793894 1638.24