Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01539 ATGGTTACTGTTGTGTTGTTAGGATCAGAGTCTTCACGGGAAAGGCCCCCCAGTAGAGGATTGAAAGACAAACCTTTCAATTATCGGACTATTGATCGACATGTTGTCACTTGGTCTCCAATGTATGGGCTCAGTTTGAAGTTGGGAGGTACTGTTCATACTGATCTAGAGGGTGGCTTTGTTGCTGTCAAAAAATTTTGTAATAATTTGTCTTCATTGATGTGTGTTGTGTTCCTTCTGCAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTGTTAGAGAAAACAATGAACTATTTTTCATTTTTGAATACATGGATTGTAATCTTTATCAATTAATAAAGGAGAGAGAGAAGCCCTTTTCAGAGGAAGAGATACGGTGCTTTGTGAGGCAAGTGCTACAAGGACTTAGTCATATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGAGAATTTGCTCGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTAGCTAGAGAAGTATCCTCGATGCCTCCATATACTCAATATGTTTCCACACGGTGTCTTTATCCTCTGAACATGTTTAATGAGAAAGGGAAATTACATGAATATGGGATATGTTTATTCCTAAAATTGAACTATTACGCTTCCATTACATCTTATAAAATTCCTTTCTCCGTTGATAGTGAAATAGATCAACTGTACAAAATATATGGCATTCTTGGGATGCCAGATTCCACTGCTTTCACCATTGGGGCAAACAACTCTCAATTATTGGACTTAGTTGCTCATGAAATTGTTCCGCCTGTGAAGCTTTCTGATATTATTCCAAATGCTAGTTCGGAAGCTATAGACTTGATGACACAACTGTTACATTGGGACCCATCACGAAGGCCAGATGCAGATCAGTCGTTACAACATCCATTTTTCCATGTGGATGCATGGGTTCCTTGTCCACTCAGTGATCCACTTGAGCTGAAGCTGAGTAGCAATAGGGCAAAGCCAAATCTTGAGCTGAAACTGCAGGATTTTGGCCCTGATCCCGATGATTGTTTTCTTGGCTTGACTTTAGCTGTAAAGCCCAGCGTTTCAAACTTAGACGTGGTCCAAAATGTATCGCAGGGTGTCAGAGAGAACATGCTATTTTGCTCAGATTTCAATGACCATTCAGATCAGTCAGTATTCTGGACCTTATTATCTCCTGATCGAAATGGTGTTCCTAACACAGCAGAGACTTCATTGTCATTGTCTTTCAGTTCAGTGCAACATCCACCAATTGGAGTTCCACAGTCAGCGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACTACACCATTTTTGGCTTTGTCTTCTCCCTTCCAGCGCGGTCACTGCCTTTGA 1398 0.4027 MVTVVLLGSESSRERPPSRGLKDKPFNYRTIDRHVVTWSPMYGLSLKLGGTVHTDLEGGFVAVKKFCNNLSSLMCVVFLLQALRKMNHPNIIKLKEVVRENNELFFIFEYMDCNLYQLIKEREKPFSEEEIRCFVRQVLQGLSHMHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRCLYPLNMFNEKGKLHEYGICLFLKLNYYASITSYKIPFSVDSEIDQLYKIYGILGMPDSTAFTIGANNSQLLDLVAHEIVPPVKLSDIIPNASSEAIDLMTQLLHWDPSRRPDADQSLQHPFFHVDAWVPCPLSDPLELKLSSNRAKPNLELKLQDFGPDPDDCFLGLTLAVKPSVSNLDVVQNVSQGVRENMLFCSDFNDHSDQSVFWTLLSPDRNGVPNTAETSLSLSFSSVQHPPIGVPQSAGFSFQPLQPNILTTPFLALSSPFQRGHCL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01539 465 SMART serkin_6 42 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01539 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Spst4g01539 465 ProSiteProfiles Protein kinase domain profile. 38 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01539 465 Gene3D Transferase(Phosphotransferase) domain 1 112 318 - -
Spst4g01539 465 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 58 338 - -
Spst4g01539 465 Gene3D Phosphorylase Kinase; domain 1 53 111 - -
Spst4g01539 465 SUPERFAMILY Protein kinase-like (PK-like) 58 335 IPR011009 -
Spst4g01539 465 Pfam Protein kinase domain 79 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01539 465 FunFam Mitogen-activated protein kinase 111 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01539 Spst-Chr4 54378360 54385633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01539 29 330 Core Cell Cycle Gene Families AT1G73690 29.870 4.12e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Spst4g01539 Pkinase 2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01539 K08829 K08830 gmx:100792842 654.44