Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01537 ATGCTTTCTTGGAATACTTCTACTCACTTCTGTAATTGGCATGGAATCACATGCAATTCCACGCTTACGAGAGTTACTGAGTTGAGCTTGCAAGGGTACAAGTTGAAAGGGAAGATATCTCCTCACATAGGTAATCTATCTTTTATGAGAAGATTTGAACTTGGAAACAACAGTTTTCATGGCAATATCCCGCCAGAAGTGGGACGATTGTCCCAATTGCAAATTTTCAAGGTTGAAAATAACACATTGGTAGGAGAAATTCCTTCCAATTTGACATATTGTACTCAACTCAAAGTTTTATTTTTGTATGGAAACAATCTTCTGGGAAAAATACCAACCGAAATTGGGTTACTCCAGAAGGTTCAACTTCTGAACTTTGGTCGAAACCAATTAACGGGAGGAATTCCATCATCAATAGGGAATCTTTCATCAGTGACATATATCTCCCTGACTTTTAACAACTTAGAGGGAGATATTCCAATACAAATATGTCATCTCAATAGCTTGACAATTATAGCTTTGGGTGTTAACAATCTCAATGGAACATTTCCTTCTTGTCTTTATAATATGTCATCTCTTATTGGAATCTCAGTTTCAGACAACCAATTCAGTGGCTCTCTTCCATCCAACATGTTCCACAACCTCCCAAATCTCCAGGCACTTGTACTAGGTGGCAATCATATCTCAGGTCCAATTCCACCTTCCATTACAAATGCATCCTTACTCTCACTCTTTGAGATAGTCGAAAACCATTTTGTGGGAAGAGTTCCAAGTCTTGGAAAACTGCAAAATCTTTATCGCCTAAATTTGGGTAAGAACAATTTAGGTGACAATTCAACTACTGGTTTGGAGTTTTTAAAATCATTGATGAACTGTACTAAGTTGAAAATATTAGCTCTATCTTTCAATAATTTTGGAGGTCATTTGCCAAATTCTTTGGGCAATTTTTCCACCCAACTAAGTGAACTATATCTCGGATACAATGACATATCTGGAGAAATCCCTGAGGCAATAGGAAATCTAGTTGGCTTAACTCTATTGACCATATACAATAACCACATTGATGGGATTATCCCAACAACTTTTGGAAAGCTGAAAGTGCTTCGAGTGTTAGGCTTACGGGGAAACAATTTGTCAGGAAAGATAGAACCCTTCATTGGCAACCTTAGTCAATTGTTTTATTTGGACCTGCGAGCAAATCAGTTTGAAGGGAGTATTCCTCCAAGTATAGGAAACTGCCAAATCCTACAACATCTAGATCTTTCGCAGAACAATCTTACAGGAACCATACCGCTAGAGGTTTTTAATCTTTCCTCTTTATTTGACAAGTTGGCTTTGTCACATAACTCGTTGAGTGGTAGTATACCAGAGAAAGTGGGAAAGTTAAAAAATATCGACTTTCTAGATATGTCTCTGAATCATTTGTCTGGTCACATTCCTAGTGGTATTGGAGAATGCATGATGATAGAGTACCTCTATTTGCAAGGGAATTCTTTACAAGGAATCATACCATCTTCTTTGGCATCACTTAAAAGTATTATACTTTTGGACCTATCACAAAACCATTTGTCTGGTTCAATTCCAAATATTCTGCAAAACCTTTCTTTCTTACAACATTTCAATGTATCTTTTAACATGTTGGAAGGTGAGGTACCCACTGGAGGTGTCTTTCGAAATGCAAGTGCTGTAGTTGTGACTGGAAATAGTAAGCTTTGTGGAGGTATTTCTGAATTGCATCTACCACCATGCCCTGTCAAAAGTAAGAAACTTGCAAAACACCACAAGTTCAGACTGATAGTAGTGATATTGAGTGTAGTTGCGTGTCTTATTGTACTATCATGTATATTAACCATCTATTGGTCGAGGAAAAAGGGAAAGAAACCTTCCCTTGATTCATCAACAATTGAGCAATTGGCTAAAGTTTCCTACCAAAGCTTATACAACGGAACTGATGGGTTCTCAACTACAAATTTGATAGGGAATGGAAATTTTAGTTCTGTCTACAAAGGAACTCTTGAGTTAGAAGACAGAGTTGTTGCCATAAAAGTTCTAAACCTGCAAAGAAAAGGAGCTCACAAGAGCTTCGTAGCTGAATGTAATGCACTGAAAAACATTAAACATCGAAATCTTGTTCAGATTTTGACATGTTGTTCTAGCACAGACTACAAAGGTCAAGAATTCAAAGCTTTAATCTTTGAGTACATGAGAAATGGAAGCTTAGAGCAATGGTTGCATCCTCCCACAACAAGTGTAGAGCCCCCGAGAACATTGAGGCTTAGTCAAAGATTAAATATCATGATTGACGTAGTTTCTGCATTACATTATCTCCATCATGAATGTGACCAATTGATCATTCATTGTGATTTAAAGCCAAGCAATGTGCTTCTTGATGATGACATGACTGCTCATGTAAGTGATTTTGGCATAGCAAGACTTCTCTCATCAATCAAAGGTATCACCACTAAACAATCAAGTACACTTGAAATAAAGGGAACTATTGGCTATGCTCCTCCAGTGGGTTGTGAAGTGTCAACTTATGGCGACATGTACAGCTTTGGAATTCTCATGTTGGAAATGCTTACTGGGAGAAGACCTACAGATGAAACGTTTGAAGATGGTCAAAATCTTTGTAACTTTGTTGCAATATCATTTCCCAATAAACTTTCCCAAATTATGGATCCACGACTAACTCCAATTGAGGAAAATGAAATGAATCTTAATCCAATTGTTGAGAAGCACTTAGTTTCACTTTTTAGGATTGGACTTGCCTGTGCCGTGGAATCACCAAAAGAAAGAATGGATGTGGTTGATGTTAGCAAGGAGCTTCATCAAATCCGAAAAGCCTTGGTTGGGACGAGCTCTATACTGGGAAATGATCTTAATATATATCCTTGA 2895 0.3755 MLSWNTSTHFCNWHGITCNSTLTRVTELSLQGYKLKGKISPHIGNLSFMRRFELGNNSFHGNIPPEVGRLSQLQIFKVENNTLVGEIPSNLTYCTQLKVLFLYGNNLLGKIPTEIGLLQKVQLLNFGRNQLTGGIPSSIGNLSSVTYISLTFNNLEGDIPIQICHLNSLTIIALGVNNLNGTFPSCLYNMSSLIGISVSDNQFSGSLPSNMFHNLPNLQALVLGGNHISGPIPPSITNASLLSLFEIVENHFVGRVPSLGKLQNLYRLNLGKNNLGDNSTTGLEFLKSLMNCTKLKILALSFNNFGGHLPNSLGNFSTQLSELYLGYNDISGEIPEAIGNLVGLTLLTIYNNHIDGIIPTTFGKLKVLRVLGLRGNNLSGKIEPFIGNLSQLFYLDLRANQFEGSIPPSIGNCQILQHLDLSQNNLTGTIPLEVFNLSSLFDKLALSHNSLSGSIPEKVGKLKNIDFLDMSLNHLSGHIPSGIGECMMIEYLYLQGNSLQGIIPSSLASLKSIILLDLSQNHLSGSIPNILQNLSFLQHFNVSFNMLEGEVPTGGVFRNASAVVVTGNSKLCGGISELHLPPCPVKSKKLAKHHKFRLIVVILSVVACLIVLSCILTIYWSRKKGKKPSLDSSTIEQLAKVSYQSLYNGTDGFSTTNLIGNGNFSSVYKGTLELEDRVVAIKVLNLQRKGAHKSFVAECNALKNIKHRNLVQILTCCSSTDYKGQEFKALIFEYMRNGSLEQWLHPPTTSVEPPRTLRLSQRLNIMIDVVSALHYLHHECDQLIIHCDLKPSNVLLDDDMTAHVSDFGIARLLSSIKGITTKQSSTLEIKGTIGYAPPVGCEVSTYGDMYSFGILMLEMLTGRRPTDETFEDGQNLCNFVAISFPNKLSQIMDPRLTPIEENEMNLNPIVEKHLVSLFRIGLACAVESPKERMDVVDVSKELHQIRKALVGTSSILGNDLNIYP 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01537 964 Pfam Protein kinase domain 655 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01537 964 Pfam Leucine rich repeat N-terminal domain 2 19 IPR013210 -
Spst4g01537 964 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 18 284 - -
Spst4g01537 964 Gene3D Ribonuclease Inhibitor 279 584 IPR032675 -
Spst4g01537 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Spst4g01537 964 FunFam LRR receptor-like serine/threonine-protein kinase EFR 285 589 - -
Spst4g01537 964 SMART serkin_6 653 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01537 964 ProSitePatterns Protein kinases ATP-binding region signature. 659 682 IPR017441 GO:0005524
Spst4g01537 964 SMART LRR_typ_2 215 239 IPR003591 -
Spst4g01537 964 SMART LRR_typ_2 416 437 IPR003591 -
Spst4g01537 964 SMART LRR_typ_2 190 214 IPR003591 -
Spst4g01537 964 SMART LRR_typ_2 389 413 IPR003591 -
Spst4g01537 964 SMART LRR_typ_2 510 533 IPR003591 -
Spst4g01537 964 SMART LRR_typ_2 341 364 IPR003591 -
Spst4g01537 964 SMART LRR_typ_2 118 142 IPR003591 -
Spst4g01537 964 SMART LRR_typ_2 462 486 IPR003591 -
Spst4g01537 964 SMART LRR_typ_2 534 559 IPR003591 -
Spst4g01537 964 Gene3D Ribonuclease Inhibitor 1 138 IPR032675 -
Spst4g01537 964 Gene3D Ribonuclease Inhibitor 143 209 IPR032675 -
Spst4g01537 964 SUPERFAMILY Protein kinase-like (PK-like) 628 942 IPR011009 -
Spst4g01537 964 ProSiteProfiles Protein kinase domain profile. 653 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01537 964 PRINTS Leucine-rich repeat signature 510 523 - -
Spst4g01537 964 PRINTS Leucine-rich repeat signature 416 429 - -
Spst4g01537 964 PANTHER OS04G0122200 PROTEIN 52 162 - -
Spst4g01537 964 SUPERFAMILY L domain-like 318 573 - -
Spst4g01537 964 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 735 954 - -
Spst4g01537 964 Pfam Leucine rich repeat 490 547 IPR001611 GO:0005515
Spst4g01537 964 Pfam Leucine rich repeat 344 402 IPR001611 GO:0005515
Spst4g01537 964 Pfam Leucine rich repeat 168 228 IPR001611 GO:0005515
Spst4g01537 964 Gene3D Ribonuclease Inhibitor 210 278 IPR032675 -
Spst4g01537 964 FunFam LRR receptor-like serine/threonine-protein kinase EFR 624 734 - -
Spst4g01537 964 SUPERFAMILY L domain-like 5 275 - -
Spst4g01537 964 Gene3D Transferase(Phosphotransferase) domain 1 735 954 - -
Spst4g01537 964 Gene3D Phosphorylase Kinase; domain 1 633 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01537 Spst-Chr4 54370400 54373535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01537 3 953 Receptor kinase-like Gene Family AT3G47570 45.285 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Spst4g01537 Pkinase 3.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01537 - - vun:114166412 1412.13