Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01498 ATGTCAGGGAAGAAACCCAGAGAGTTGAACATAAAGCTGCTATGCCCCTCCCTCTCGAAGGTGGCTCAAGTGGTGGCGTGGGAGGACCAGAGAATCGACTTGGGCTTCATTTCACGGGCCTTTGGGCTGGACCCATCATCGCTGAGGCTGAACGGTCACTTCATCAGCAGAGGGGTGGACCTCATCGCTTCCTCCCTCACTTGGAACTCTGTTCTCTCTTTCTTCTCCGCCAAAGGCTTGTCCACTGGCAAAGATCAATGTGATGCTCTTGTCGTCACTGGCAAGCTCTGCAAAATTGGACTCAAGCGACGACATGACTCACTAAATTTTCAAAGTGGGATTGGCAAGATTATGGAAAATGAGAATGCTGGTAACATTAAAGGAATTCAACCGGAAGCTATCAACTTGTTCAAGAGTAAGAAGTTGAAAGAGAGCACCTCAGCCACTGAACAGGAGAGGATTCAAGCGGGTAAGAGACTCCTTGAAGCAAAGCGAATTGCTGAAGAAAATGAGAGAAAACGGAATTTAGCCCTGAGAAAAGCGGAAAAAGAAGAAGAGAAAAGAGCTAGAGACAAAGTTCTACAGAAACTAGAGCAGGATAAGAATTTGAATCCTGTTTACACAACTACAAAAGCTGAGCAGTTAAGAGAATATCTAAGGAATCTTAAGCGTCACCATCAGGGTGAGGGTGCCAGAGTCAGAAGAGCCTTTCGAACACTACTAATCTATGTTGGAAATGTTGTCAAGAATCCCAAGGAGGAAAAGTACAGGAAAATCCGACTGAATAACCCATTATTTCTGGATAGAGTTGGAAGTTTAAGTGGTGGTGTAGAGTTTCTTGAGCTATGTGGTTTTGAGAGAGGTGGTGACTTCTTGCATCTTCCTGAAGAAAAGGTTGACATGGCACTGCTGAATTCAGCTGGTTTTGTCTTAAATTCTGCAATTACAAACCCTTTCTTTGGACTTTTAATGAGAAAACATCATTCTTTGACCCTAAATCTCTTCAAAACGCCGGAGAAATTTTTCTTCCATGGCGGAATCTCTGTAGTAACCAGCCCGCGCGCCCACACACACAGTGACTCACTCACTGCGCATTTCCAGACGCACGGAAGGGAAACAATCGATGACTCTGTGACGGACGCAGCCCGAAAGTTAGAAACCCTAAGCCCCTGTCGCTGGACCGCCGCCTTGCTTCACCTTCTCTGCTGTGGTCTGAAGCTCTCTTCTGTCGTGCTGCACTCGCTGCTTCATGCACGTTTTCGGCGTTCAATGTTCTATCTCAGTAAAATCGAACACAAATTGCCCCTGCCACCTACTCGTCTTGTTCTTCCCATTCGAGAAGCTATACACATGGAGCTTGAGAAACTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTTTGCATTTCTGTCTATGATATCAGATCCATTGACGGTGGGTTTATCTTTCCCGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATATGGTCATGTTTCGTCCATTTGGGGGGGAGATTATTACTGCTAGGCTTCTTTCATCTGATTCTGATGGCTTGCGATTAACTCTTGGATTCTTTGATGATATTTATGTCCCTGCACATCATATGCCCTACCCAAATCGCTTTGTGGCGGATGAACAAGGAAAGAGGAAAGGCGATTGGTATTGGGATTTTAATGAACAAGAATATCCTATTCAAGAATCAGATGTGATCAAATTTCGAGTTCAAAATGTGAGTTATCCGCCAATTCCGGTTGAGCAACCGAAAGAGTCAAAGCCATTTGCACCTATGTTGGTTACTGGATCGTTAGATCATGATGGTCTAGGCCCTGTATCTTGGTGGTTGGAATAG 1854 0.4498 MSGKKPRELNIKLLCPSLSKVAQVVAWEDQRIDLGFISRAFGLDPSSLRLNGHFISRGVDLIASSLTWNSVLSFFSAKGLSTGKDQCDALVVTGKLCKIGLKRRHDSLNFQSGIGKIMENENAGNIKGIQPEAINLFKSKKLKESTSATEQERIQAGKRLLEAKRIAEENERKRNLALRKAEKEEEKRARDKVLQKLEQDKNLNPVYTTTKAEQLREYLRNLKRHHQGEGARVRRAFRTLLIYVGNVVKNPKEEKYRKIRLNNPLFLDRVGSLSGGVEFLELCGFERGGDFLHLPEEKVDMALLNSAGFVLNSAITNPFFGLLMRKHHSLTLNLFKTPEKFFFHGGISVVTSPRAHTHSDSLTAHFQTHGRETIDDSVTDAARKLETLSPCRWTAALLHLLCCGLKLSSVVLHSLLHARFRRSMFYLSKIEHKLPLPPTRLVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNMVMFRPFGGEIITARLLSSDSDGLRLTLGFFDDIYVPAHHMPYPNRFVADEQGKRKGDWYWDFNEQEYPIQESDVIKFRVQNVSYPPIPVEQPKESKPFAPMLVTGSLDHDGLGPVSWWLE 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01498 617 FunFam Predicted protein 503 615 - -
Spst4g01498 617 PANTHER F13M7.16 PROTEIN 138 202 - -
Spst4g01498 617 Coils Coil 166 203 - -
Spst4g01498 617 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 431 487 IPR005576 GO:0006351
Spst4g01498 617 Gene3D - 213 313 - -
Spst4g01498 617 CDD PUB_UBA_plant 219 323 - -
Spst4g01498 617 Gene3D - 424 502 IPR036898 -
Spst4g01498 617 SUPERFAMILY Nucleic acid-binding proteins 502 611 IPR012340 -
Spst4g01498 617 SMART PGNneu 235 296 - -
Spst4g01498 617 SUPERFAMILY PUG domain-like 213 319 IPR036339 -
Spst4g01498 617 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 424 501 IPR036898 -
Spst4g01498 617 CDD RNAP_III_Rpc25_N 425 503 - -
Spst4g01498 617 Pfam RNA polymerase III subunit Rpc25 506 615 IPR013238 -
Spst4g01498 617 Gene3D - 503 615 IPR012340 -
Spst4g01498 617 Pfam PUB domain 233 300 IPR018997 -
Spst4g01498 617 CDD UDM1_RNF168_RNF169-like 158 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01498 Spst-Chr4 53770304 53787386 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01498 157 323 C2H2 Transcription Factor Family AT1G04850 55.276 1.16e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01498 K03022 - gmx:100800770 334.724