Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01494 ATGGAAGGTCGCCGGAGGATAACACTTTATGATCAAATGACAGCTGGCAACAGTAACAACAGCAGCAGCAGCCGAGACTCGCTAGCAAGCCTCATGCTCGACGACGTCGTTTTCAAGAAGACCGAAGCCGAAGCCGAAGCGAGTCGCAAAATGAGCCGAAGCCGAACTCTCCAAGACATTATTCGCGAAGAGAAACCTAACGGCGACGCGAAGGATCGCAATTCTTGGAAAGCCTTCAAGGAAAAGCTTCGGCTCAAGCGCGCCATCGGCTCGGCTTGGTCGTCCTCCGCCACTAATCACAGTAATAATAGCAATAATAACGACGACGATACTGATGGAAATTTACCTGAAACTCGCCTCGACTCGGATTCGGCGACTCAGCAGAACGACATCGTTGCGGAAGACGTAAACGCAAACGCAAACGATTCGGCTCCGATCCCGCAGCTCGGATCTCCGGCGGACAACGTGGCGACCGGAGGCGACTCCTCCGACGGGGAGAACAACCACGAGGCGGCGGTTGGCGTGTCGTTGATGGATTTGTTGGAGGAAGCGGAGCAGGAAATGGATTTGTACAGAGTGAGCGATGACGATGAGGTGGTGGAAGAATTTGAAAAGGGAGAAGAAGAGGAAGAAGAAGAAAAAAAGGGTGTGGTGGAGTATAACTGCTGCGTGTGCATGGTGCGGCATAAAGGCGCAGCGTTTATCCCGTGCGGACACACGTTCTGCAGAATGTGCTCCAGGGAGATTTGGGTGAGCAGAGGGAATTGCCCTCTCTGCAATAATTTAATTCTGGAAATTCTTGATATTTTCTAA 813 0.5178 MEGRRRITLYDQMTAGNSNNSSSSRDSLASLMLDDVVFKKTEAEAEASRKMSRSRTLQDIIREEKPNGDAKDRNSWKAFKEKLRLKRAIGSAWSSSATNHSNNSNNNDDDTDGNLPETRLDSDSATQQNDIVAEDVNANANDSAPIPQLGSPADNVATGGDSSDGENNHEAAVGVSLMDLLEEAEQEMDLYRVSDDDEVVEEFEKGEEEEEEEKKGVVEYNCCVCMVRHKGAAFIPCGHTFCRMCSREIWVSRGNCPLCNNLILEILDIF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01494 270 MobiDBLite consensus disorder prediction 94 111 - -
Spst4g01494 270 SMART ring_2 222 259 IPR001841 -
Spst4g01494 270 MobiDBLite consensus disorder prediction 11 26 - -
Spst4g01494 270 SUPERFAMILY RING/U-box 221 266 - -
Spst4g01494 270 MobiDBLite consensus disorder prediction 1 26 - -
Spst4g01494 270 Pfam Zinc finger, C3HC4 type (RING finger) 220 263 - -
Spst4g01494 270 ProSiteProfiles Zinc finger RING-type profile. 222 260 IPR001841 -
Spst4g01494 270 PANTHER OS01G0917900 PROTEIN 4 270 - -
Spst4g01494 270 CDD RING-HC 222 259 - -
Spst4g01494 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 270 IPR013083 -
Spst4g01494 270 MobiDBLite consensus disorder prediction 94 126 - -
Spst4g01494 270 MobiDBLite consensus disorder prediction 43 76 - -
Spst4g01494 270 MobiDBLite consensus disorder prediction 140 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01494 Spst-Chr4 53607368 53608180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01494 4 270 C3H Transcription Factor Family AT3G25030 37.313 4.70e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01494 - - gmx:100819018 347.821