Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01485 ATGTCTCTTCCAAGACCCAGTAGTGAAGATAAAGCTCCTTCTCAGCTTAAAGAAGGAGCAGCAGCAGCAACTTCTGCATCAACACCAGCACCAGCCTCATCCTCTTCTTCATGGAACAGGCTTCACGCCTTCCCTCCTTTAAATCTTCATAACAAGAGTAGCAAAATTGAAGACAGTGATGAAGACATGTTCACAGTTCCAGATGTGGAGGCCACACCCAATCCTCTTCATTCTGCACTCACTCTTCCCAACAACCTTAATCAGCGTAACGTCGGAGATCCTCAGTTTCAAACTGGTTTCCCTGGAAAGCGCCGCCGGGGAAGAAACCCCGCAGATAAGGAACATAGACGCCTCAAAAGGTTGTTGCGAAATAGGGTTTCTGCACAACAAGCCCGAGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCGAAAGAGTTGCAAGATAAAAACGCCATCTTGGAAGAACGTATCTCTACTTTGATCAATGAGAACACCATGCTTAGGAAGGTTCTTATGAATGCAAGGCCAAAAGTTGATGATAGCATTGAACAAAAGCAAGAGCAGTTAAGTAAGAGCTAA 588 0.4456 MSLPRPSSEDKAPSQLKEGAAAATSASTPAPASSSSSWNRLHAFPPLNLHNKSSKIEDSDEDMFTVPDVEATPNPLHSALTLPNNLNQRNVGDPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELQDKNAILEERISTLINENTMLRKVLMNARPKVDDSIEQKQEQLSKS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01485 195 Coils Coil 132 166 - -
Spst4g01485 195 FunFam Transcription factor HY5 135 176 - -
Spst4g01485 195 CDD bZIP_HY5-like 126 167 - -
Spst4g01485 195 SMART brlzneu 112 176 IPR004827 GO:0003700|GO:0006355
Spst4g01485 195 SUPERFAMILY Leucine zipper domain 116 175 IPR046347 GO:0003700|GO:0006355
Spst4g01485 195 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 114 177 IPR004827 GO:0003700|GO:0006355
Spst4g01485 195 Pfam bZIP transcription factor 113 172 IPR004827 GO:0003700|GO:0006355
Spst4g01485 195 MobiDBLite consensus disorder prediction 20 42 - -
Spst4g01485 195 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 119 134 IPR004827 GO:0003700|GO:0006355
Spst4g01485 195 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 22 189 IPR044280 GO:0000981|GO:0045944
Spst4g01485 195 MobiDBLite consensus disorder prediction 82 114 - -
Spst4g01485 195 MobiDBLite consensus disorder prediction 1 60 - -
Spst4g01485 195 Gene3D Single helix bin 135 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01485 Spst-Chr4 53463752 53467337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01485 95 184 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 75.824 1.54e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst4g01485 bZIP_1 2.9e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01485 K16241 - gmx:778143 313.153