Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01476 ATGGAACAGGGTCAATGTTGGACAAAACGGAAGTACTCTTTGAGCTCGAGTCTTAGTTCACCAACCAATCCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTTAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGTCATGACCTTGAAACTCAACTCCATAAGCCAGTTCAAAGTCCTTTTTCTTCTTTGGGTGGTTACCTATACCCTTCTCCTGTTTGTGGTTTGGCTTATAAAAAAACTAACCCTAATTCTTATCCTGATTTTGTTGCGTCACCTTCTTCTTCTCCCTCACCTTCCAAGTTCTTATTGGCTCCATCAGTTAATAGTGGTAACTCCAAGGAGGAAACCATAATTCCACTTTATGATTCCTCTATTCTCCACAAGATTTCTTCTGTCTGTAATTCTTCTGTATCATGGTCAAATTTAGCTGAAGATCATAGATTATATTCATACAAGTTCCACCCTCAAGCTGATACTAAGAATCCCTCCAAGGGAATAATGGATTCTAGATGTAGGGATGATAAGGGGGATAATGATGATATTGACGGGGATATGAGCTTGAATTCATTTGTCTATAGAACTCACCCATCTATGCAGTTTGAGAGTACTAAAGAGGCAGATCATACCAGTTGCAAGAAGAGGAAAACAGATGCTTCCTCAACACTATTTTGCCCAAAGTCAAGCTCAGTTGATAGACATCATGTTCAGCCAAAGATGTTTGAACTTAGCCCTAGCTCACTGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG 939 0.4132 MEQGQCWTKRKYSLSSSLSSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLETQLHKPVQSPFSSLGGYLYPSPVCGLAYKKTNPNSYPDFVASPSSSPSPSKFLLAPSVNSGNSKEETIIPLYDSSILHKISSVCNSSVSWSNLAEDHRLYSYKFHPQADTKNPSKGIMDSRCRDDKGDNDDIDGDMSLNSFVYRTHPSMQFESTKEADHTSCKKRKTDASSTLFCPKSSSVDRHHVQPKMFELSPSSLEELDLELRLGNRSKV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01476 312 MobiDBLite consensus disorder prediction 250 265 - -
Spst4g01476 312 Pfam C2H2-type zinc finger 53 77 - -
Spst4g01476 312 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Spst4g01476 312 Gene3D Classic Zinc Finger 50 102 - -
Spst4g01476 312 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Spst4g01476 312 MobiDBLite consensus disorder prediction 248 271 - -
Spst4g01476 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Spst4g01476 312 PANTHER OS07G0101800 PROTEIN 25 309 - -
Spst4g01476 312 SMART c2h2final6 53 75 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01476 Spst-Chr4 53352921 53353859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01476 1 89 C2H2 Transcription Factor Family AT5G06070 56.667 6.89e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst4g01476 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01476 - - gmx:100801427 512.301