Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst4g01476 | ATGGAACAGGGTCAATGTTGGACAAAACGGAAGTACTCTTTGAGCTCGAGTCTTAGTTCACCAACCAATCCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTTAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGTCATGACCTTGAAACTCAACTCCATAAGCCAGTTCAAAGTCCTTTTTCTTCTTTGGGTGGTTACCTATACCCTTCTCCTGTTTGTGGTTTGGCTTATAAAAAAACTAACCCTAATTCTTATCCTGATTTTGTTGCGTCACCTTCTTCTTCTCCCTCACCTTCCAAGTTCTTATTGGCTCCATCAGTTAATAGTGGTAACTCCAAGGAGGAAACCATAATTCCACTTTATGATTCCTCTATTCTCCACAAGATTTCTTCTGTCTGTAATTCTTCTGTATCATGGTCAAATTTAGCTGAAGATCATAGATTATATTCATACAAGTTCCACCCTCAAGCTGATACTAAGAATCCCTCCAAGGGAATAATGGATTCTAGATGTAGGGATGATAAGGGGGATAATGATGATATTGACGGGGATATGAGCTTGAATTCATTTGTCTATAGAACTCACCCATCTATGCAGTTTGAGAGTACTAAAGAGGCAGATCATACCAGTTGCAAGAAGAGGAAAACAGATGCTTCCTCAACACTATTTTGCCCAAAGTCAAGCTCAGTTGATAGACATCATGTTCAGCCAAAGATGTTTGAACTTAGCCCTAGCTCACTGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG | 939 | 0.4132 | MEQGQCWTKRKYSLSSSLSSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLETQLHKPVQSPFSSLGGYLYPSPVCGLAYKKTNPNSYPDFVASPSSSPSPSKFLLAPSVNSGNSKEETIIPLYDSSILHKISSVCNSSVSWSNLAEDHRLYSYKFHPQADTKNPSKGIMDSRCRDDKGDNDDIDGDMSLNSFVYRTHPSMQFESTKEADHTSCKKRKTDASSTLFCPKSSSVDRHHVQPKMFELSPSSLEELDLELRLGNRSKV | 312 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst4g01476 | 312 | MobiDBLite | consensus disorder prediction | 250 | 265 | - | - | |
Spst4g01476 | 312 | Pfam | C2H2-type zinc finger | 53 | 77 | - | - | |
Spst4g01476 | 312 | SUPERFAMILY | beta-beta-alpha zinc fingers | 50 | 79 | IPR036236 | - | |
Spst4g01476 | 312 | Gene3D | Classic Zinc Finger | 50 | 102 | - | - | |
Spst4g01476 | 312 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - | |
Spst4g01476 | 312 | MobiDBLite | consensus disorder prediction | 248 | 271 | - | - | |
Spst4g01476 | 312 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 80 | IPR013087 | - | |
Spst4g01476 | 312 | PANTHER | OS07G0101800 PROTEIN | 25 | 309 | - | - | |
Spst4g01476 | 312 | SMART | c2h2final6 | 53 | 75 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst4g01476 | Spst-Chr4 | 53352921 | 53353859 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst4g01476 | 1 | 89 | C2H2 Transcription Factor Family | AT5G06070 | 56.667 | 6.89e-26 | 101 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Spst4g01476 | zf-C2H2_6 | 1.3e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst4g01476 | - | - | gmx:100801427 | 512.301 |