Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01472 ATGGCCACCCTCAACATGTTCCTCAGACTCTTGTCTTTGTTGTTGTTCCTTCTGATCCCAGTTTCATCTCAGCCTAACCAGATCTTCTATGCTGGATTCAAGGGTGTGGATGGCAATAATATGACCCTTGATGGGGTGGCAGAAATAGAGCCAAATGGGGTACTGAAACTCACTAATGATTCAAGTAAAGTAATGGGTCATGCTTTTTATCCAACTGCTTTTAAGTTCAAGAACCCTAGTGATGGTAAAGCTTTCTCCTTTTCTTCTTGTTTTGCCTTGGTTATTGTTCCTGAGTTTCCAAAGCTAGGAGGGCATGGCCTTGCTTTTACAATTGCAACATCTAAGGATCTGAAGGCTCTTCCAAGCCAGTATCTTGGTCTTCTTGACTCAAGTGACATTGGGAACTTCTCCACCCACCTCTTTGCTGTTGAGTTTGACACAGCCCGAGATTTTGAGTTTGGGGACATCAATGACAACCATGTTGGAATTGACATTAATAGCTTGGCCTCCAATGCTTCTGCACCTGCTGGTTACTACACTGGGGATCATGATTCAGCCAAACATAATCTCACACTTCAAAGTGGGCAACCCATTCTAGTTTGGGTTGATTATGACTCTGCTCAAAGTGTTGTTAATGTCACAATTTCTGCATCCTCTACCAAACCCAGAAGGCCACTCTTGTCCTTTCCTGTGGATCTTTCACCAATCCTTAAGGATTTCATGTATGTTGGGTTCTCTGCATCAACAGGGTTACTTGCTAGCTCCCATTATATCTTGGGTTGGAGCTTCAAAGTCAATGGGCCAGCTCCACCCCTTGATCTCTCTTCCCTCCCACAGCTTCCAGGGCCAAAGAGGAAACTCACATCTTTGATAATTGGGTTTTCAGTCTCTGGTGTTGTTCTTGCGTTGTTTGCTGTTTTACTTGGCTTCTACATGTATAGAAGGTACAAAAATGCTGATGTTATAGAAGCTTGGGAGCTTGAGATTGGGCCACACAGGTATTCCTACCAAGAGCTCAAGAAAGCAACAAAAGGTTTCAAGGACAAAGAGCTGCTTGGACAAGGTGGATTTGGGAGCGTCTACAAAGGAACATTGCCAAATTCCAATACCCAAGTTGCTGTTAAGAGAATTTCACATGACTCCCGACAAGGCCTGAGAGAATTTGTATCAGAAATAGCCAGCATAGGCCGGCTTCGCCACCGGAATCTGGTTCAGCTGCTGGGGTGGTGTCGCCGCCGTGGTGATCTCCTCCTTGTGTATGATTTCATGGCTAACGGGAGCTTAGACAAGTACTTGTTTGATGAGCCAGAAACAATCCTAAGTTGGGAACAAAGATTTAAGGTCATCAAGGATGTTGCTTCTGCCCTTTTGTATCTGCATGAGGGCTATGAGCAGGTGGTGATACATAGAGATGTGAAGGCTAGCAATGTGCTGCTTGATGGTGAACTCAATGGAAGGCTAGGAGATTTTGGATTAGCCAGGTTGTATGAACACGGGGCTAACCCAAGTACCACAAGGGTAGTTGGGACCTTAGGCTATTTGGCACCTGAAGTGCCTAGGACAGGGAAAGCCACTCCTAGCTCAGATGTTTTTGCATTTGGTGCACTTTTACTTGAGGTGGCATGTGGGCTTAGACCACTTGATCCAAAGGCAATGCCAGAAGATTTGGTTTTGGTTGATTGTGTGTGGAACAAGTACAAACAAGGAAGAATACTTGATGTGGTGGACCCTAGACTACATGGTGCTTTCAATAAAAGAGAGGTGCTCATGGTGTTGAAATTGGGGCTTCTGTGTTCAAATGGCTCTCCCACTGCTAGGCCTAGCATGAGACAGGTGGTGAGGTTTTTGGATGGAGATGTTAGTGTGCCAGATGAGTTGAAAAAGCCAGGAGAAACAGGTTCCCAGGAGGGTTTTGATGAATTCTTGCACTTGCTTGAATCTTCTTCGTTCGATCAGATGAGCAGAAGTTCCTATGATAGAAGTAGATACATGAGTGGCAGTTTTACTGATACATCTCTTTTTACTCCCCATGGTAAAAAAGAAACAATATGA 2052 0.4464 MATLNMFLRLLSLLLFLLIPVSSQPNQIFYAGFKGVDGNNMTLDGVAEIEPNGVLKLTNDSSKVMGHAFYPTAFKFKNPSDGKAFSFSSCFALVIVPEFPKLGGHGLAFTIATSKDLKALPSQYLGLLDSSDIGNFSTHLFAVEFDTARDFEFGDINDNHVGIDINSLASNASAPAGYYTGDHDSAKHNLTLQSGQPILVWVDYDSAQSVVNVTISASSTKPRRPLLSFPVDLSPILKDFMYVGFSASTGLLASSHYILGWSFKVNGPAPPLDLSSLPQLPGPKRKLTSLIIGFSVSGVVLALFAVLLGFYMYRRYKNADVIEAWELEIGPHRYSYQELKKATKGFKDKELLGQGGFGSVYKGTLPNSNTQVAVKRISHDSRQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPETILSWEQRFKVIKDVASALLYLHEGYEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPEVPRTGKATPSSDVFAFGALLLEVACGLRPLDPKAMPEDLVLVDCVWNKYKQGRILDVVDPRLHGAFNKREVLMVLKLGLLCSNGSPTARPSMRQVVRFLDGDVSVPDELKKPGETGSQEGFDEFLHLLESSSFDQMSRSSYDRSRYMSGSFTDTSLFTPHGKKETI 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01472 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Spst4g01472 683 CDD lectin_legume_LecRK_Arcelin_ConA 30 267 IPR001220 GO:0030246
Spst4g01472 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 284 IPR013320 -
Spst4g01472 683 SMART serkin_6 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01472 683 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Spst4g01472 683 FunFam L-type lectin-domain containing receptor kinase S.4 24 271 - -
Spst4g01472 683 SUPERFAMILY Protein kinase-like (PK-like) 328 633 IPR011009 -
Spst4g01472 683 PANTHER - 18 623 - -
Spst4g01472 683 FunFam Lectin-domain containing receptor kinase A4.3 331 422 - -
Spst4g01472 683 Gene3D - 27 266 - -
Spst4g01472 683 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Spst4g01472 683 ProSiteProfiles Protein kinase domain profile. 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01472 683 Pfam Legume lectin domain 29 277 IPR001220 GO:0030246
Spst4g01472 683 FunFam L-type lectin-domain containing receptor kinase S.4 423 629 - -
Spst4g01472 683 Pfam Protein kinase domain 346 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01472 683 CDD STKc_IRAK 352 618 - -
Spst4g01472 683 Gene3D Transferase(Phosphotransferase) domain 1 423 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01472 Spst-Chr4 53325653 53327704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01472 21 682 Receptor kinase-like Gene Family AT3G55550 57.965 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Spst4g01472 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01472 - - gmx:100801247 1166.37