Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01446 ATGGTTTTTACTTCCATACCAGCTTCTTATTTTGATGCAGCCAACTGGCAGCAACAGCAACCAAATAACCAGCCCGAAGGCAGCGGTTCCAGCTCTCAGCAGCTGCTTCCACTTCCGCCACCGCCACCGCCACCCCCACCCCCTCCGACTGCAATGCGGTCTCACGAAGAGAGTTCAATCAGGCCAGGATCCATGGTTGATAGAGCAAGGATGGCTAACATGTCAATGCCAGAGGTCGCACTCAAGTGTCCACGCTGCGAATCCACCAACACCAAATTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGCAGAAGGTATTGGACTAGAGGCGGCGCCCTAAGGAGCGTCCCCGTCGGCGGAGGCTGCAGGAGGAACAAACGGAGCAAAGGAAGCGGAGGCGGTGGCGGCGGCTCCAACTCTCCGGCGAGTTCTGACCGCCAGACAGGGAGTGCCAGCTCCTCCAACTCGGTATCTTCTAAGAGTGAGAGAATAGGGCTTGCACCCCAAATTCCACCCCTCAGATTCATGCCTCCGTTGCATCAACTCACTGACTTCGGACCTGGAGATATTGGCCTAAACTATGGCCTCAGTTATGGCCCAATGGGAGGAGTAGGGGACTTGAGTTTTCAAATTGGAGCTAGTGCTTTTGGTGGTGCCACTTCAGTCTTGTCTGCACCTGGTTTGGACCAATGGAGAATGCCACAACAGTTTCCACTCTTGGCTGCCTTGGAAGGTCCATCACCAGCTTCTAATTTATACCCTTTTGAAGGCAGTGCTGAGGTGAGTGGATATATAAGGCCAAAGGTTTCAACTGCTGGGGTCATGACTCAGTTAGCTTCAGTGAAAATGGAAGATAGTAGGGAACTTAACTTGTCAAACCAGTTCTTGGGAAACAATAATCCAGTGAGTGAACAATATTGGACCAGTGCTACTTCTGCATCTTGGACAGATATTTCCCCCTTTGGCTCTTCCTCCACTACTGGCAACCATCTATAG 1020 0.5167 MVFTSIPASYFDAANWQQQQPNNQPEGSGSSSQQLLPLPPPPPPPPPPPTAMRSHEESSIRPGSMVDRARMANMSMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGSGGGGGGSNSPASSDRQTGSASSSNSVSSKSERIGLAPQIPPLRFMPPLHQLTDFGPGDIGLNYGLSYGPMGGVGDLSFQIGASAFGGATSVLSAPGLDQWRMPQQFPLLAALEGPSPASNLYPFEGSAEVSGYIRPKVSTAGVMTQLASVKMEDSRELNLSNQFLGNNNPVSEQYWTSATSASWTDISPFGSSSTTGNHL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01446 339 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
Spst4g01446 339 MobiDBLite consensus disorder prediction 13 61 - -
Spst4g01446 339 MobiDBLite consensus disorder prediction 140 171 - -
Spst4g01446 339 MobiDBLite consensus disorder prediction 13 34 - -
Spst4g01446 339 MobiDBLite consensus disorder prediction 125 171 - -
Spst4g01446 339 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677|GO:0006355
Spst4g01446 339 SUPERFAMILY Formin homology 2 domain (FH2 domain) 39 49 - -
Spst4g01446 339 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Spst4g01446 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 176 IPR045174 GO:0003700|GO:0006355
Spst4g01446 339 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01446 Spst-Chr4 52823979 52825573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01446 1 332 C2C2-Dof Transcription Factor Family AT2G37590 40.390 1.97e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst4g01446 zf-Dof 6.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01446 - - rcu:8279572 336.65