Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01442 ATGGATGACAAAGGATGCCCTGAAGAAAGTGAAGAACAGAGCAAGCAAAAGGGGAAGGCGGAGACGGTGGCGTTTCACAAGCTGTTTGCTTTTGCCGACGGCGCAGACATTGTGTTGATGGTGGTTGGAAGCTTTGGTGGCATTGGAAATGGTTTGGGGTTTCCTCTTATGACATTACTGTTTGGTGAAATAATTGACACCTTTGGTGGTAACCAGAACAGCCCCAACATAGTTGAAAAAGTGTCCCAGGTTTCCCTTAAATTTGTGTACCTGGCAGTAGGATCTGGGATCGCAGCTTTTCTCCAGGTGACTTGCTGGATGGTGACAGGGGAGAGACAGGCGGCGAGGATTAGGGGATTGTATTTGAAAAGTATCCTAAGACAAGACATTGTTTTCTTTGACAAGGAGACAAACACTGGGGAAGTGATAGGGAGAATATCAGGTGATACTGTTCTCATTCAAGACGCCATGGGAGAGAAGGTTGGGAAGTTTGTGCAGCTGATAGCAACGTTCATAGGGGGCTTTGCGATAGCATTTGCGAAAGGGTGGCTTCTTACAGTTGTGATGCTGTGCATGCTTCCACTCCTTGTTTTGTCAGGAGCTGCCATGGCCATCATCCAGGGAAGGATGGCTTCCAGAGGTCAAGCTGCCTATGCAAAAGCTGCACACGTACTTCACCAGACAATTGCATCCATAAGAACAGTTGCATCATTTACAGGGGAAAAACAGGCAGTGTCTAACTACAGCAAATTTCTTGTAGAAGCTTACGTAACAGGAGTTCATGAAGGTTCTGTTGCTGGGGTGGCCCTTGGCACAGTTATGCTTCTTGTTTTTAGTGGTTATGCTTTGGCAGTGTGGTTTGGCGCAAAGATGATAATGGAAAATGAAGAGAAATATAATGGGGGCACGGTGCTTAATGTGATTGCTTCTTTTTTAACTGCTTCAATGTCTCTTGGGGAGGCATCCCCTATCATGAGTGCTTTTGCTGCGGGTCAAGCTGCAGCTTACAAAATGTTTGAAACAATTGAGAGGAAGCCAGTGATAGATGCTTATGATCCAAATGGGAAAATATTGGAAGATATTGAAGGTGAAATAGAGTTGAGGGATGTTTGTTTCAGTTATCCAACGAGGCCTGAGGAGTTGATATTCAATGGTTTCTCTCTTGATATACCTAGTGGTACAAGTGCTGCACTAGTGGGACAAAGTGGGAGTGGAAAATCTACGGTTATCAGTTTGATAGAGAGATTCTATGATCCTCAGGCAGGTGAAGTTCTTATTGATGGCATTAATCTGAAAGAGTTTCAGCTTAGGTGGATGAGGGGGAAAATTGGCCTTGTTAACCAGGAGCCAGTGTTGTTTGCATCAAGCATTAAAGATAACATTGCATATGGAAAGGAGGGAGCCACAATTGAAGAGATAAGATCAGCATGTGGACTTGCAAATGCTACTAAATTCATTGACAAACTGCCACAGGGATTGAACACAATGGTTGGTGAACAAGGAACTCAACTCTCTGGTGGACAGAAACAGCGCATTGCCATAGCAAGAGCAATCTTAAAGGATCCAAGAATTCTACTTCTGGACGAAGCTACTAGTGCCCTTGATGCAGAGTCTGAAAGGACAGTGCAAGAGGCTCTAGACAGGGTAATGGTTAACCGAACCACTGTTGTTGTGGCGCATCGGTTGAGCACAGTAAGGAATGCTGATATGATTGTTGTAATTCATAGAGGGAAGGTGGTTGAAAAAGGAAGACACTCGGAACTACTCAAGGATCTCGAGGGAGCTTACTCTCAATTGATACGTTTACAAGAAGTAAACAAGGAATCAGAAGAAACTACAAGCTATCACAGCAAGAGTGAACTTTCTACAGAACCCTCTACACAGTTAACTAAAAAGAGATCACTTAGGAGATCCATTAGCAGGGGATCATCATCGGGGGGTAGTAGCAGCCACTCATTTTCTCTTTCCAATGGTTTACCCACAGGAGTTAGTGTCCCTGCTACTGAAGATGAAGACTTATTACTTGAAAATCAAGCACAAGAGGTTTCACTTCACCGACTTGCTTCCCTCAACAAGCCAGAGTTTCCAGTTCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGTGTTATACTTCCCATATTTGGGGTGTTGATATCCAGTGCGGTTAAAACATTTTATGAACCAGTTAATGAGGTGAAAAAGGACTCCAAATTTTGGGCACTAATGTTTGTGGTCCTTGGTCTTGCATCATTGTTGGTAATTCCAGCTCGAGCATACTTTTTTTCTGTGGCTGGATGCAAGTTAATCCAACGTATCAGGGTAATATGTTTTGAGAAAGTGGTGAGCATGGAGGTTGGTTGGTTTGATGAGCCTAGCAACTCAAGTGGTGCCATTAGTGCAAGGCTCTCAGAAATTGCTGCTTCTGTGCGCGCCCTTGTTGGTGATGCACTGGGGCTGTTGGTCCAAAATATAACATGTGCCTTGGCAGGTTTGATCATTGCTTTCATTGCATGCTGGCAGCTGGCTTTGATTATTCTTGTCTTGATTCCCCTTATTGGTGCAAATGGCTATGTTCAAACGAAATTCTTGAAGGGGTTCAGCAAAGATGCGAAGATGATGTACGAAGAAGCAAGCCAAGTTGCTAAGGATGCAGTTGGAAATATAAGAACAGTAGCTTCTTTCTGTGCTGAAGACAAGGTTATGGACTTGTATAGGATGAAATGTGAGGACCCCATGAAAACAGGGATATGGCAAGGGTTGATCAGTGGATTAGGATTTGGGGTTTCATTTTTCTTACTGTTTTGTGTCTATGCAACTAGTTTCTATGCAGGAGCTAGACTAGTGGCCTCTGGAGAAGCATCATTCTCAGATGTTTTTCGGGTTTTCTTTGCTTTAACCATGGCAGCTATTGGAGTTTCCCAGTTTAGCACAATTTCTCCAGATTCTGGCAAAGCCAAGTCAGCTACTGCTGCCATATTTAGCATAATTGATAAGAAGTCAGAGATAGATCCAAGTAATGAGTCTGGTACCACATTGGATAGAGTTGAGGGAGAAATTGAGTTTCGTCATGTGAATTTCAAGTACCCATCAAGGCCTAAGATACAGATATTTCGAGACCTTAACTTGGTTATCCATTCTGGCAAGACAGTAGCCCTTGTTGGTGAAAGTGGAAGTGGAAAATCCACAGTGATTGCGTTGTTGCAGAGATTTTATGATCCCAATTCAGGTCAAATCACACTTGATGGTGTACCAATTGGGGAGCTACAACTCAAGTGGTTTAGACAGCAAATGGGTCTTGTAAGCCAAGAGCCAGTATTGTTCAATGACACTATTCGTGGCAACATTGCTTATGGGAAGGGAGGTGATGCAACTGAAGCAGAAATCATAGCAGCAGCAGAACTAGCTAATGCCCATGTGTTTATCAGTGGATTACAACAGGGCTATGACACTGCAGTGGGAGAAAGGGGAACCCAATTATCTGGTGGGCAGAAGCAAAGAGTAGCCATTGCCCGTGCTATGATTAAAAGTCCAAAAATATTGCTATTGGACGAAGCCACAAGTACATTAGATGCTGAATCAGAGAGAGTTGTTCAAGAAGCATTGGACAAAGTCATGGTGAATATGACCACTGTGGTGGTGGCACATAGCCTATCTGCAATAAAAAATGCAGATTTGATTGCTGTTGTGAAAGATGGAGGCATTGTAGAGAAGGGAAGCCATGAAACACTCGTTCGAGTCAAGGATGGGTTTTATGCTTCCTTAATCCAACTTCACTCAAATGCTTCAAAAATTTTGGTTCCTTAA 3807 0.4342 MDDKGCPEESEEQSKQKGKAETVAFHKLFAFADGADIVLMVVGSFGGIGNGLGFPLMTLLFGEIIDTFGGNQNSPNIVEKVSQVSLKFVYLAVGSGIAAFLQVTCWMVTGERQAARIRGLYLKSILRQDIVFFDKETNTGEVIGRISGDTVLIQDAMGEKVGKFVQLIATFIGGFAIAFAKGWLLTVVMLCMLPLLVLSGAAMAIIQGRMASRGQAAYAKAAHVLHQTIASIRTVASFTGEKQAVSNYSKFLVEAYVTGVHEGSVAGVALGTVMLLVFSGYALAVWFGAKMIMENEEKYNGGTVLNVIASFLTASMSLGEASPIMSAFAAGQAAAYKMFETIERKPVIDAYDPNGKILEDIEGEIELRDVCFSYPTRPEELIFNGFSLDIPSGTSAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLRWMRGKIGLVNQEPVLFASSIKDNIAYGKEGATIEEIRSACGLANATKFIDKLPQGLNTMVGEQGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERTVQEALDRVMVNRTTVVVAHRLSTVRNADMIVVIHRGKVVEKGRHSELLKDLEGAYSQLIRLQEVNKESEETTSYHSKSELSTEPSTQLTKKRSLRRSISRGSSSGGSSSHSFSLSNGLPTGVSVPATEDEDLLLENQAQEVSLHRLASLNKPEFPVLLIGCVAAIANGVILPIFGVLISSAVKTFYEPVNEVKKDSKFWALMFVVLGLASLLVIPARAYFFSVAGCKLIQRIRVICFEKVVSMEVGWFDEPSNSSGAISARLSEIAASVRALVGDALGLLVQNITCALAGLIIAFIACWQLALIILVLIPLIGANGYVQTKFLKGFSKDAKMMYEEASQVAKDAVGNIRTVASFCAEDKVMDLYRMKCEDPMKTGIWQGLISGLGFGVSFFLLFCVYATSFYAGARLVASGEASFSDVFRVFFALTMAAIGVSQFSTISPDSGKAKSATAAIFSIIDKKSEIDPSNESGTTLDRVEGEIEFRHVNFKYPSRPKIQIFRDLNLVIHSGKTVALVGESGSGKSTVIALLQRFYDPNSGQITLDGVPIGELQLKWFRQQMGLVSQEPVLFNDTIRGNIAYGKGGDATEAEIIAAAELANAHVFISGLQQGYDTAVGERGTQLSGGQKQRVAIARAMIKSPKILLLDEATSTLDAESERVVQEALDKVMVNMTTVVVAHSLSAIKNADLIAVVKDGGIVEKGSHETLVRVKDGFYASLIQLHSNASKILVP 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01442 1268 MobiDBLite consensus disorder prediction 607 657 - -
Spst4g01442 1268 SUPERFAMILY ABC transporter transmembrane region 685 1004 IPR036640 GO:0005524|GO:0016020
Spst4g01442 1268 FunFam ABC transporter B family member 1 1010 1260 - -
Spst4g01442 1268 Gene3D ABC transporter type 1, transmembrane domain 86 994 IPR036640 GO:0005524|GO:0016020
Spst4g01442 1268 ProSitePatterns ABC transporters family signature. 1160 1174 IPR017871 GO:0005524|GO:0016887
Spst4g01442 1268 Pfam ABC transporter 1039 1188 IPR003439 GO:0005524
Spst4g01442 1268 CDD ABC_6TM_Pgp_ABCB1_D2_like 688 1003 - -
Spst4g01442 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Spst4g01442 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1257 IPR027417 -
Spst4g01442 1268 FunFam ABC transporter B family member 9 27 361 - -
Spst4g01442 1268 Gene3D - 363 620 IPR027417 -
Spst4g01442 1268 PANTHER ABC TRANSPORTER B FAMILY 8 605 IPR039421 -
Spst4g01442 1268 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Spst4g01442 1268 FunFam ABC transporter B family member 1 355 604 - -
Spst4g01442 1268 Gene3D - 1010 1265 IPR027417 -
Spst4g01442 1268 FunFam ABC transporter B family member 1 678 986 - -
Spst4g01442 1268 Pfam ABC transporter transmembrane region 698 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01442 1268 Pfam ABC transporter transmembrane region 45 316 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01442 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Spst4g01442 1268 Pfam ABC transporter 384 532 IPR003439 GO:0005524
Spst4g01442 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1257 IPR003439 GO:0005524
Spst4g01442 1268 SMART AAA_5 1047 1249 IPR003593 GO:0016887
Spst4g01442 1268 SMART AAA_5 392 578 IPR003593 GO:0016887
Spst4g01442 1268 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Spst4g01442 1268 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 326 - -
Spst4g01442 1268 CDD ABC_MTABC3_MDL1_MDL2 1020 1258 - -
Spst4g01442 1268 MobiDBLite consensus disorder prediction 618 657 - -
Spst4g01442 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 699 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01442 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01442 1268 SUPERFAMILY ABC transporter transmembrane region 26 352 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01442 Spst-Chr4 52672264 52679406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01442 2 1259 Calmodulin-binding Proteins AT2G36910 43.540 0.0 1027