Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01429 ATGGCTGAGGGTTTTGAAGCCTACCATGTGCCACAACAAAGCAGAAGAGATAAGCTTAGAGTTGTGGTGACACAGAACCAACATGGTCTCGTTGAACCCTCGACTTTACTTCCGTTGTACGACCCTTCTTCGTTCATCTCTTCTGATTTGTTAACGACCTTCCACAACAGCCAAAAACACAACTTGGGTTGTGGTGTGAAGGAAGAACGTGCGAATTTAATGATGGGTTTTGCAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGAGGAGTCATGAACAATGCCTCTTCTTCTTCTTCGTGTTGTTCTTCTAACTCCTCTTCGGTTTCTTACTTGGATCCTGAATCTTCTTTGCCTTTGAACCAAGCTACAATTCAGGTTATTAACAATAGCAGCAACAACAACAACATGTTTCTCTACCAAGCACAGAACCTGGGAGAGTTTGATCAGGGTTATAATAATAGTGGTAGTGAGATCATGGTGTTCAAGCCCGAGCCTTTGTCTTTGTCTCTGTCATCACACAACAACGGTGTGAACCTTCAGCGATATGGATCTGTGGTTTATGGTGATAAGGTTGGTGGGGTTGGTGGTGGTGGATGTGTGGTTTATGGTGGTTCTGGTTTGAATGAAGTTTCGAGGTGCACAGTGCCAATGGGGCCATTTACTGGTTATGCTTCCATATTGAAGGGATCGAGGTTCCTGAAGCCTGCGCAGCAATTATTGGAAGAGTTATGTGATGTTGGTGGAGTTTGTGCGGAGAAGATGGTAGCTGATGCATCGTTGATGGAACCTATTCCTCTCCCTCCGCCTGAGAGTTCAAGCGAAGATCTACTAGGGGATCACGGGGGTGACCAGGGTCGCAAAAAGTCAAGACTGTTAACTATGCTTGATGAGGTGTACAGGAGGTACAGGCAATACTATCAGCAGATGCACGCGGTGGTAACATCATTTGAGTATGTTTCAGGACTTAGCAATGCAGCTCCCTATGCAAGTTTGGCTTTAAAAGCCATGTCCAAACATTTTAAATGCTTGAAGAATGCAATTACTGACCAGCTTCAGTTTGCCAATAAAGCTCATTTTCATATCAGCAACAGGAAGGATGAATCTCCAAGGTTTGGCAACAGTGATAGAGGCCCTTACGGCCAAAGGCCAGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCCGAGCGGGCAGTGACGGTTCTCAGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCGACTGATACCGACAAGCTAATGTTGGCCAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAAACACGGCAAGCCCAAAAGAATTCACAGAAGGAAGAACATTGCAGGAACAAATCAAGTGATCAATTACCTTCTGACAACTCCATTGTTTCTGAGAATCCATCAGCATCAACAGAAAAGTTTCAGGATAATCCTTACAAGCGTGCTACAGACGAACTTCCTAACATACCAATTAGGACACAAGAGCAGCTGAATCTTCCCTGCACAAGCAATCAGCCAGGGGGTGTTGGAGTGAGCATGGGTGGCAGTGGAAGCAATAGTGTGTCACTCACACTAGGCCTTTATCAAAATCATGGTATCGGGTTGGCTGAACCTTTTCCCTTGAATGCAGCACAGAGGTTTGGTGTTGCTCTTGAAACCAACAATGAAGGCTATGTCATGAGTGGATATGAGTCACAGAATAGGCATTTTGGAAGAGATGTCATTGGAGGACAACTGTTGCATGACTTTGTAGGCTGA 1839 0.4557 MAEGFEAYHVPQQSRRDKLRVVVTQNQHGLVEPSTLLPLYDPSSFISSDLLTTFHNSQKHNLGCGVKEERANLMMGFAGGGGGGGGGGGVMNNASSSSSCCSSNSSSVSYLDPESSLPLNQATIQVINNSSNNNNMFLYQAQNLGEFDQGYNNSGSEIMVFKPEPLSLSLSSHNNGVNLQRYGSVVYGDKVGGVGGGGCVVYGGSGLNEVSRCTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAEKMVADASLMEPIPLPPPESSSEDLLGDHGGDQGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLSNAAPYASLALKAMSKHFKCLKNAITDQLQFANKAHFHISNRKDESPRFGNSDRGPYGQRPGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNSQKEEHCRNKSSDQLPSDNSIVSENPSASTEKFQDNPYKRATDELPNIPIRTQEQLNLPCTSNQPGGVGVSMGGSGSNSVSLTLGLYQNHGIGLAEPFPLNAAQRFGVALETNNEGYVMSGYESQNRHFGRDVIGGQLLHDFVG 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01429 612 MobiDBLite consensus disorder prediction 481 503 - -
Spst4g01429 612 MobiDBLite consensus disorder prediction 364 386 - -
Spst4g01429 612 Pfam Homeobox KN domain 409 448 IPR008422 GO:0003677|GO:0006355
Spst4g01429 612 SMART HOX_1 392 456 IPR001356 GO:0003677
Spst4g01429 612 MobiDBLite consensus disorder prediction 265 286 - -
Spst4g01429 612 SUPERFAMILY Homeodomain-like 394 459 IPR009057 -
Spst4g01429 612 FunFam BEL1-like homeodomain protein 9 395 457 - -
Spst4g01429 612 ProSiteProfiles 'Homeobox' domain profile. 389 452 IPR001356 GO:0003677
Spst4g01429 612 MobiDBLite consensus disorder prediction 463 510 - -
Spst4g01429 612 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 117 474 - -
Spst4g01429 612 MobiDBLite consensus disorder prediction 521 540 - -
Spst4g01429 612 Gene3D - 395 457 - -
Spst4g01429 612 SMART prehox3 221 349 IPR006563 -
Spst4g01429 612 MobiDBLite consensus disorder prediction 463 480 - -
Spst4g01429 612 Pfam Associated with HOX 226 348 IPR006563 -
Spst4g01429 612 CDD homeodomain 392 453 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01429 Spst-Chr4 52315458 52320269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01429 148 612 Homeobox Transcription Factor Family AT5G02030 51.613 8.48e-126 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Spst4g01429 POX 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01429 - - gmx:100805512 1036.94