Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01426 ATGTTGAGCCGCGCATCGAATGTTTCGGCTGAAGCAGTGGTTGGTTCGGGTGAGGGTGAGGATGAGTTGTATGAGCAGCTGTGGAAGGCTTGCGCGGGACCACTGGTGGATGTTCCTCGTGCTGGCCAGAGAGTGTTCTATTTTCCGCAAGGCCACATGGAGCAATTAGAGGCTTCAACCAACCAGGAATTGAATCAGAGGATTCCTCTCCTGCAGCTTCCCACGAAGATCCTTTGTCGCGTCGTGAACGTTCATTTGCTTGCTGAGCAAGAAACGGATGAGGTTTATGCGCAGATCACTTTGGTGCCGGAATTTAATCAAGATGAACCCACAAGTGCTGATCCGTGCACTGCTGAACTTCCAAGGGCACCGGCTCACACGTTCTGCAAGGTCTTGACTGCTTCAGATACTAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCTACAGAGTGCCTTCCTGCATTGGATATGTCCCAACCAACACCGACCCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACCTCGAAGAGATTAGTTGCTGGAGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAGCTACGAGTTGGAGTGAGACGTCTAGCTCGCCAGGCAAGTAGCATGCCTTCATCTGTTATTTCGAGTCAAAGCATGCACCTGGGAGTTCTCGCAACTGCCTCTCATGCTGTTGCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAATTCATCATAGGTGTGAATAAGTATTTGGAGGCTGTGACCCACAAGTTTAGTGTTGGCATGAGGTTCAAGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTCTCGGGTACCATAATTGGAATTGAAGATATTTCTCCTCATTGGGAAAATTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAACTTGCAGCTGTTCCAAGACCTGAGAGGGTTTCACCATGGGAGATAGAGCCATTTGTTGCTTCTGCTTCTACACCCTCAGTTCAACCCACTGCTATAAAGACTAAAAGGCCCCGACCATCCAGCGAAGTTCCAGATGTTGACACAACATCCGCGGCTTCTGTTTTCTGGGATACTGGTCTGCCACAGCCTGATTTGACACAAATCAATGTTTTGACCGAAATCAAACGGAATGACAATACTGGTACATGGCATCATATGCAAAGTGACATGAATAGTAAAAGCAACAGCAACAACACGTTGTTAAGGAATCAGACAGAAGGAAGTTGGCTGTCATCTCCTCATTCCAGTTGTCCATCTCATTTGTTTCAAGACACAACAGATGATAGCAAGAGTGTTTCAGCTTGGCCTGTTTCAAAGCCTCACTCGTCCAGATTGAATAATGAGCATGCGCTTGACCAAATTGACAAGGAGAGCAAAGAGACTGCTACAAGTTATCGGTTGTTTGGAATTGATCTTATTGATCATTCTAGGAACTCACCTGCTGTAGATAAGGCATCTCCACATGCCGTAAATATACCTAAAGTTACTACTGAAGGATGTACCAGCACCTTGTCTCAAGCAGATGCTGGCCATAAGTCGGAGGTACCAAAAACTTCTTCCAAGGAGAGGAAACAAGAACAGCAACAAGTATCTCCGAAGGAGACTCAGAGCAAGCAAATTTCTAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTAGATTTAACCATGTTGGATGGGTACGAGCAACTTATAAATGAATTAGAGGAGATGTTTGACCTAAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTTGTGGAAGCAAACTGCCAATCTCTTCGGTGGAAGATGGGACTGTAATAAGCTCAGACACAACTGAAACCTGA 2082 0.4601 MLSRASNVSAEAVVGSGEGEDELYEQLWKACAGPLVDVPRAGQRVFYFPQGHMEQLEASTNQELNQRIPLLQLPTKILCRVVNVHLLAEQETDEVYAQITLVPEFNQDEPTSADPCTAELPRAPAHTFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNKYLEAVTHKFSVGMRFKMRFEGDDSAETDKRFSGTIIGIEDISPHWENSKWRSLKVQWDELAAVPRPERVSPWEIEPFVASASTPSVQPTAIKTKRPRPSSEVPDVDTTSAASVFWDTGLPQPDLTQINVLTEIKRNDNTGTWHHMQSDMNSKSNSNNTLLRNQTEGSWLSSPHSSCPSHLFQDTTDDSKSVSAWPVSKPHSSRLNNEHALDQIDKESKETATSYRLFGIDLIDHSRNSPAVDKASPHAVNIPKVTTEGCTSTLSQADAGHKSEVPKTSSKERKQEQQQVSPKETQSKQISRSRTKVQMQGVAVGRAVDLTMLDGYEQLINELEEMFDLKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSCGSKLPISSVEDGTVISSDTTET 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01426 693 Gene3D - 577 670 - -
Spst4g01426 693 CDD B3_DNA 128 228 IPR003340 GO:0003677
Spst4g01426 693 MobiDBLite consensus disorder prediction 428 484 - -
Spst4g01426 693 FunFam Auxin response factor 126 230 - -
Spst4g01426 693 MobiDBLite consensus disorder prediction 543 588 - -
Spst4g01426 693 ProSiteProfiles PB1 domain profile. 582 663 IPR000270 GO:0005515
Spst4g01426 693 MobiDBLite consensus disorder prediction 554 569 - -
Spst4g01426 693 FunFam Auxin response factor 289 362 - -
Spst4g01426 693 SUPERFAMILY DNA-binding pseudobarrel domain 118 257 IPR015300 -
Spst4g01426 693 MobiDBLite consensus disorder prediction 366 386 - -
Spst4g01426 693 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Spst4g01426 693 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Spst4g01426 693 MobiDBLite consensus disorder prediction 570 588 - -
Spst4g01426 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst4g01426 693 SMART B3_2 128 230 IPR003340 GO:0003677
Spst4g01426 693 MobiDBLite consensus disorder prediction 428 498 - -
Spst4g01426 693 Pfam AUX/IAA family 625 666 IPR033389 -
Spst4g01426 693 Pfam AUX/IAA family 561 618 IPR033389 -
Spst4g01426 693 Coils Coil 606 626 - -
Spst4g01426 693 FunFam Auxin response factor 577 670 - -
Spst4g01426 693 Pfam Auxin response factor 254 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst4g01426 693 Gene3D - 125 229 IPR015300 -
Spst4g01426 693 SUPERFAMILY CAD & PB1 domains 584 658 - -
Spst4g01426 693 Gene3D - 289 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01426 Spst-Chr4 52251483 52255204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01426 16 675 B3 DNA Binding Superfamily AT4G23980 58.886 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst4g01426 AUX_IAA 6.4e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01426 K14486 - gmx:100779003 1242.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00594 1 7757271 7761625 Spst4g01426 4 52251483 52255204 PCT