Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01400 ATGCTGCTGACTACTCCCCCCTTCAACTCTCTCTTTTCCCACTTATTCTCCTTTGCCTTTCACCATCTGGGCCAGAAATTGATCCAGTTAATTCTAGATCCTTCAAGAATGCTATTTCCTTTACATGGGCTGTGGGATTTTTACATGGAAATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTATTACGTTCTTATGTCAAACAATATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACCCCTCTCAACAGAGATGCAAAGTCATGCTTAGAAAGGTGGAAAAACTATCTCAAGCCTGGCATCAAGAAAGGGTCTCTTACAGAAGAGGAGCAGCGCCTCGTAATCTGGCTTCAAGCAAAATACGGTAACAAATGGAAGAAAATTGCAGCAGAAGTTCCAGGTAGAACTGCCAAGAGGTTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAAAGAGAGAAGAAGGAGATCAATAGAATCCCTGACCCGATTAACAGCAAGTACGAACACATACTTGAGAGTTTTGCAGAAAAACTGGTAAAGGAACAACATCCTTCACCATCATTTGTAATGGCTGCTTCTGATGGAGCATTTCTGCGTCCTGACACACCAACACCTGCATCAGCCTTGCTTCCTTCTTGGCTTTCCAATTCTAGTAGTGCTGCTGCTGCTGGTGGCCCAAGTTCCCTTTCTGTGACACTAAGTCTTTCTTCCTCAACAGCGTGGTTGCAACATGATAGAGTACCAGACAATGCTCCTTTAGTTTTGGGGAACATACCAGCTTTTAGTGAAAATATGTTGATATCTCAGATGGTGGAGCACTGCGAAGAGTTGGAAGAGGGGCATCGTGCTTTGTCTGCACACAAGAAGGAGGCAGCTTGGAGGTTAAGTCGGGTGGAGTTGCAGTTGGAGTCAGAAAAGGTGAGCCGAAAAAGGGAGAAGACAGAAGAGTTTGAAGCAAAGATTAAGGCTCTTCAGGAAGAGGAGAGAGCTGCTTTGGGCAGAATTGAAGCAGAATACAGAGAAGAGTTAGCCGCATTGAGGAGAGATGCTGAAAACAAGGAGCTAAAGTTGGCAGAACAATGGGCTGCAAAGCATTTGCAGCTAACTAGGTTGCTAGAGCAGATACGGTGTAGAGCAGGGCTCCCTGAGCCAAATGCAAGATGA 1188 0.4554 MLLTTPPFNSLFSHLFSFAFHHLGQKLIQLILDPSRMLFPLHGLWDFYMEMKERQRWRAEEDALLRSYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIWLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKEINRIPDPINSKYEHILESFAEKLVKEQHPSPSFVMAASDGAFLRPDTPTPASALLPSWLSNSSSAAAAGGPSSLSVTLSLSSSTAWLQHDRVPDNAPLVLGNIPAFSENMLISQMVEHCEELEEGHRALSAHKKEAAWRLSRVELQLESEKVSRKREKTEEFEAKIKALQEEERAALGRIEAEYREELAALRRDAENKELKLAEQWAAKHLQLTRLLEQIRCRAGLPEPNAR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01400 395 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Spst4g01400 395 Coils Coil 344 368 - -
Spst4g01400 395 ProSiteProfiles Myb-like domain profile. 49 103 IPR001005 -
Spst4g01400 395 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 51 388 - -
Spst4g01400 395 Pfam Myb-like DNA-binding domain 57 118 - -
Spst4g01400 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Spst4g01400 395 SMART sant 108 156 IPR001005 -
Spst4g01400 395 SMART sant 53 105 IPR001005 -
Spst4g01400 395 SUPERFAMILY Homeodomain-like 54 148 IPR009057 -
Spst4g01400 395 Gene3D - 112 176 - -
Spst4g01400 395 CDD SANT 113 154 IPR001005 -
Spst4g01400 395 Coils Coil 315 342 - -
Spst4g01400 395 FunFam MYB-related transcription factor 54 108 - -
Spst4g01400 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Spst4g01400 395 Gene3D - 54 108 - -
Spst4g01400 395 CDD SANT 56 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01400 Spst-Chr4 51821222 51823846 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01400 51 390 MYB Transcription Factor Family AT2G37630 60.811 6.69e-138 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g01400 Myb_DNA-bind_6 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01400 K09422 - gmx:100101908 523.857