Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01399 ATGAAGGAAAGACAACGTTGGAAGGCTGAAGAGGATGAATTGCTGTGTGCTTATGTGAGAGAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACGCATCTCAACAGGGATGCAAAATCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGGTCTCTAACAGAGGAAGAGCAGCGACTTGTTATCCGGCTTCAAGAGAAACACGGCAACAAGTGGAAGAAAATTGCTGCAGAAGTTCCAGGTAGAACTGCTAAGAGGTTAGGAAAGTGGTGGGAAGTTTTTAAAGAGAAGCAACAAAGGAAGAAACAAGAGATTAACAAAGCAATTGGCCCAGTTGATGACACCAGATATGATCATATTCTAGAGACTTTTGCTGAGAAGCTTGTGAAAGAACACCCTTCACAATCATCATACATTATGGCTGCTTCAACTGGACCCTTTATCCACACAGATGCATCTGCAACTGCTCCTGCACCTGCATCTGCATCTGCATCATCAGCAGCAGCATTGCTTCTTCCTTGGCTTTCAAATTCTAGCACCACCAATCCCTCACCAGCAACTAGGCCGCCTTCCCCTTCTGTGACACTAAGTCTCTCCCCCTCAACAGCACCTCCTCCCCCTTGGTTGAATGTAAAAACTCCTCTTGGTGATAACATGGTAGTGTCAGAGTTAATAGAGTGCTGTAAGGAGTTAGAAGAAGGGCATCATGCTATGGTGGCGCATCGGAAGGAGGCCACATGGCGATTGAGAAGGGTGGAGCTGCAGTTGGAGGCAGAGAAGGCAAGTAGAAGGAGGGAAAAAATGGAGGAGATTGAAGCTAAGATTAAGGCCCTAGGGGAAGAACAGAATGCTGCTTTGGATAGGATAGAAGCAGAATATAGAGAACAGTTAGCAGGGTTGAGGAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGTTGAGCAATGGAATGCAAAGCTCAAAAGGGTAGTGAAGTGTATGGAACAACAAGTAGGATGCAGAATACCCCTGATTGCTGAGCCTAATGGAAGGTAA 1059 0.4608 MKERQRWKAEEDELLCAYVREYGPREWNLVSQRMNTHLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRKKQEINKAIGPVDDTRYDHILETFAEKLVKEHPSQSSYIMAASTGPFIHTDASATAPAPASASASSAAALLLPWLSNSSTTNPSPATRPPSPSVTLSLSPSTAPPPPWLNVKTPLGDNMVVSELIECCKELEEGHHAMVAHRKEATWRLRRVELQLEAEKASRRREKMEEIEAKIKALGEEQNAALDRIEAEYREQLAGLRRDAESKEQKLVEQWNAKLKRVVKCMEQQVGCRIPLIAEPNGR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01399 352 MobiDBLite consensus disorder prediction 188 218 - -
Spst4g01399 352 Coils Coil 258 297 - -
Spst4g01399 352 Pfam Myb-like DNA-binding domain 7 67 - -
Spst4g01399 352 Coils Coil 299 319 - -
Spst4g01399 352 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Spst4g01399 352 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Spst4g01399 352 CDD SANT 6 53 IPR001005 -
Spst4g01399 352 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Spst4g01399 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Spst4g01399 352 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 343 - -
Spst4g01399 352 CDD SANT 63 104 IPR001005 -
Spst4g01399 352 Gene3D - 62 119 - -
Spst4g01399 352 Gene3D - 4 58 - -
Spst4g01399 352 FunFam MYB-related transcription factor 4 58 - -
Spst4g01399 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Spst4g01399 352 SMART sant 58 106 IPR001005 -
Spst4g01399 352 SMART sant 3 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01399 Spst-Chr4 51794842 51795900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01399 1 343 MYB Transcription Factor Family AT2G37630 60.212 1.36e-145 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g01399 Myb_DNA-bind_6 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01399 K09422 - zju:107430642 442.195