Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01394 ATGACTGCAATCGGTTCTGAACCGACCTGGCACTTCCCTGTTTTTGTCTCAAAATGTGTTGCTGCGGTGACAACAGTGAGTCCAGAAACAGCTGCAGCTGTAGCAGCAACCCTGAAAGATATTTTTTTTGTTTGCAAGCTACACCCTAGTCATGCAAACAGATCCACAAGGACTTTTGTTTTGGCTCTTGAAGCTGTGAGACCTAACAACCAGGCTGGTGAAACGAGTGTTGCAGCTGAGAACAGTGGTTGCAAGTGTGGATCAAACTGCACCTGCGACCCTTGCAACTTTTCTTCTGTCATGGCTTGCCTCAAGCAAATTCACTTGATACGTGCAATTTGTGTGGAGGATTATGGTTGTGATTGTGATTGTGATGCTTTTTTTCGAAAGCCATTACTCTCTTCGGTAGCTCTTCGCAGTTTCTACCTCCTTCCCTGGCTCAATTCCCGCCACTTTTCTGCTAATGGTAGAGTCAGTCTGGTTTTCTCTATTAAGGATATGACTGACGATAAAGCGGAGCAGCATGCTTTGAAGAATAAGCAAACCTATGCTGCTTCTAGTTCCTCTGCATCAGACGGAAATGGCAGTGCTATTATCACCTCATCAAGGAAAACAGGATCAGCATTGCCATCTAATAGGAGGACGACCGGCCCTGTTAGACGAGTAAAGGATGGTTGGACCGAAAAGGAGGATGAAACATTAAGGAATGCTGTTGAAGTTTTTAATGGCAAGAATTGGAAGAAAATAGCTGGGTTTTTTCAGGATAAATCTGAAGTTCAATGTCTTCATAGATGGCAAAAAGTTCTTAATCCTGATCTTGTCAAGGGACATTGGACTAAGGAGGAGGATGATAAAATAATTGAAATGGTGTCTGTACATGGACCTACAAAATGGTCTTTGATATCCAAGTCTTTGCCTGGTCGAATAGGAAAACAGTGCCGAGAACGATGGTGCAATCATCTTAATCCAGACATAAAGAAGGACCCCTGGACTTTGGAGGAGGAATTAGCCCTTATGAAAGCTCATTGTATGCATGGAAACAAATGGGCTGAAATAGCTAAGGTTCTTAATGGAAGGACTGATAATGCAATCAAGAATCACTGGAATGGTTCTTTAAAGAAAAAGAGGGATTTCTATTTAGCTAATGGAAGACTTCCACCTATTACAAAGAGCAGTGTAGAGGATGCTGTCAAAGATACTTTTGAACCATCTATAATTAACACAAATCATGATCTTTCAAACAAAGGATTAGATGTTGCCATTGTATCTTCATCTAAAGCTATAGATGTCACTAAACTGGATAACTGTGTCGAGAATCTACCAAAATCCTCTGGAACTTCTAGAGAAGTTGGTGATTCTTTAAATATTCTGGCAAAAGAACATGTTGAATCTGATTGTGTAGAGTGTAATAGATTATCTGATCTGAGATGTACTAACCTGGAATCAGCTAATTGTGGACTTGATGCTAGTCCACATTATGTGAATAATGGTGAATTGATGAACCGTGATAGATCAACCAGAAATTTTTATTCGAAGAACGAGTACTTTTCTCCTCCAATGGAGTCATCTGTTGGTTTCGTAACTCCATCTCATGTGAACAAAATTGAATTATATTCAGAATCTATTGAATCAATATTGAGAAAGGCAGCTAAAACTTTCCCAACTCCTTCAATAATTAGGAAGAGAAGGAACGAAGGTGAATTAGCTGCCACTCCTAGAAAGCTTGCAAATGCAGTTAGTCATTCACAACAAGGGAGAACAAGTTATGTTTCTGGTCATGAAAATTTGAAGTTATCTATGAGTCCAGTTAGCTATGGGAGTAATATTTTCTACAGTAAAGCCTCCAACATAACTCCATATCGATTAAGAACGAGACAAACAACTATTAAGTCTTTGGAGAAAGAACTCGATTCTGCATTTCACATGGAGAAATGTGTTAATGGAATGAAAAATTCTATTAAAGAGTCTTGTGACGAAGATTCTCATCCTACAGCACAAAAGACAGATACATAG 2013 0.3949 MTAIGSEPTWHFPVFVSKCVAAVTTVSPETAAAVAATLKDIFFVCKLHPSHANRSTRTFVLALEAVRPNNQAGETSVAAENSGCKCGSNCTCDPCNFSSVMACLKQIHLIRAICVEDYGCDCDCDAFFRKPLLSSVALRSFYLLPWLNSRHFSANGRVSLVFSIKDMTDDKAEQHALKNKQTYAASSSSASDGNGSAIITSSRKTGSALPSNRRTTGPVRRVKDGWTEKEDETLRNAVEVFNGKNWKKIAGFFQDKSEVQCLHRWQKVLNPDLVKGHWTKEEDDKIIEMVSVHGPTKWSLISKSLPGRIGKQCRERWCNHLNPDIKKDPWTLEEELALMKAHCMHGNKWAEIAKVLNGRTDNAIKNHWNGSLKKKRDFYLANGRLPPITKSSVEDAVKDTFEPSIINTNHDLSNKGLDVAIVSSSKAIDVTKLDNCVENLPKSSGTSREVGDSLNILAKEHVESDCVECNRLSDLRCTNLESANCGLDASPHYVNNGELMNRDRSTRNFYSKNEYFSPPMESSVGFVTPSHVNKIELYSESIESILRKAAKTFPTPSIIRKRRNEGELAATPRKLANAVSHSQQGRTSYVSGHENLKLSMSPVSYGSNIFYSKASNITPYRLRTRQTTIKSLEKELDSAFHMEKCVNGMKNSIKESCDEDSHPTAQKTDT 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01394 670 MobiDBLite consensus disorder prediction 178 219 - -
Spst4g01394 670 CDD SANT 226 269 IPR001005 -
Spst4g01394 670 SMART sant 222 271 IPR001005 -
Spst4g01394 670 SMART sant 326 374 IPR001005 -
Spst4g01394 670 SMART sant 274 323 IPR001005 -
Spst4g01394 670 FunFam Transcriptional activator Myb isoform A 222 274 - -
Spst4g01394 670 Pfam Metallothionein 46 96 IPR000347 GO:0046872
Spst4g01394 670 Gene3D - 222 274 - -
Spst4g01394 670 Gene3D - 275 326 - -
Spst4g01394 670 MobiDBLite consensus disorder prediction 179 214 - -
Spst4g01394 670 FunFam Transcriptional activator Myb isoform A 275 327 - -
Spst4g01394 670 CDD SANT 278 321 IPR001005 -
Spst4g01394 670 SUPERFAMILY Homeodomain-like 272 368 IPR009057 -
Spst4g01394 670 CDD SANT 329 369 IPR001005 -
Spst4g01394 670 PANTHER MYB PROTEIN-RELATED 223 308 - -
Spst4g01394 670 Pfam Myb-like DNA-binding domain 225 269 IPR001005 -
Spst4g01394 670 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 270 325 IPR017930 -
Spst4g01394 670 SUPERFAMILY Homeodomain-like 221 283 IPR009057 -
Spst4g01394 670 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 269 IPR017930 -
Spst4g01394 670 ProSiteProfiles Myb-like domain profile. 223 269 IPR001005 -
Spst4g01394 670 ProSiteProfiles Myb-like domain profile. 270 321 IPR001005 -
Spst4g01394 670 ProSiteProfiles Myb-like domain profile. 322 372 IPR001005 -
Spst4g01394 670 Pfam Myb-like DNA-binding domain 278 336 - -
Spst4g01394 670 Gene3D - 328 392 - -
Spst4g01394 670 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 326 376 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01394 Spst-Chr4 51729871 51739347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01394 162 662 MYB Transcription Factor Family AT3G09370 41.635 3.69e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g01394 Myb_DNA-bind_6 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01394 K09422 - gmx:100777236 517.694