Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst4g01380 | ATGGTTGCAAATGAAGATGCTGCGCAGGAATTTGAACCAAAGAAGAAGCCACTTTCAGAGGATGAGAAGAGGAAGAAGAAAATTGAACCTGGGAGTTTGATGAAAGCTTTGATTAGGCCCGGTGGGGGTGATGCTGGACCTTCAGATGGAGACCAGATTATCTATCACTGCACCGTTCGAACTTTGGATGGAGTACTCGTGGAATCTAGCAGATCTGATTATGGAGGTGAGTTTAAGATGAAACCTCAGTTGCATTATGGTGAGGACGATTGTCCTATTTCTGCTCCTGATGGTTTTCCTAAAGAGGATGAACTTCATTTTGAAATTGAGCTGATAGAATTTTTCAAAGCCAAGGCAAGGATGATTTCAGCAAAGACAGTTTCTGGGAAATTGATCATGTCACATTCAGAAGGAGAACCATACTTGTTTACATTTGGAAAATCAGAGCTACCTAAAGGCCTTGAAATGGCAATAGGAACAATGGTTCGGGAGGAGAAGGCTGTTATATATGTTACTGCTCAGTATTTAACTGAGTCTCCTCTGATGCCTGTAATAGAAGATTATGATGAAGTTCATTTTGAAGTGGAGCTAGTTCACTTTATTCAGGTGAGGGACATGCTTGGAGATGGGCGCCTAATAAAACGCCGAATTCAGGATGGCAAAGGTGATTTTCCTATGGATTGTCCCCTTCATGACAGTCTACTTCGTGTTCATTACAAGGGTACTGTTCTCAACGAAGAAAAGAAGGTATTCTATGATACAAGGGTAGACAATGATGGTCAGCCATTGGAGTTCAGTTCTGGAGAAGGGCTTGTACCAGAGGGATTTGAAATGAGTGTTCGTCTAATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCCTATGATAAGTTTCCAAGACCTTCAAATGTTCCTGAGGGTGCACATATTCAATGGGAAATTGAGCTTCTAGGTTTTGAAACGCCAAAGGACTGGACAGGATTGGACTTTAAAACTATAATGAATGAAGCTGAAAACATCAGAAACACGGGTAACAGGCTGTTCAAAGAAGGGAAATATGAACTTGCCAAGGCAAAGTATGAAAAGTTGCTTCGAGAGTTTAATCATATTAATCCTCAAGATGATGAAGAAGGAAAGGTTTTTGCAGACACACGAAATTTGCTACATCTGAATGTTGCTGCATGCCATCTAAAATTGGGAGAATGCAAAAAGTCCATTGAGACTTGCAATAAGGTTTTGGAAGCAAATCCTGCACATGTCAAGGGCCTTTATCGACGTGGAATGGCTTACATGACAGCTGGAGATTTTGAAGAAGCAAGAGCTGATTTCAAAATGATGATGAAAGTTGACAAGTCAACTGAATCAGATGCAACTGCAGCTCTTCAAAAACTGAAGCAGAAGGAACAGGAAGTTGATAAGAAAGCTAGGAAACAATTTAAAGGGCTATTTGACAAGAAGCCTGGAGACATTGCAGAAGCTAAAGCGGATGTTGATGGAGATCAAATAACAAGTGAGAGCCAGAAGGATGATGAAGTACATGGAGACTCTGATGGAACAAATTCAGAGGATTCACATGAAACCCCGCCTGAGACACCTCGAACTAGTTGGTTCTCTCTCTTTTGGCCTTCTGGTAGAAGTCTTTTTGAATCTCTTGGGCTTAATAGGTGTACCATACTTTAA | 1692 | 0.4131 | MVANEDAAQEFEPKKKPLSEDEKRKKKIEPGSLMKALIRPGGGDAGPSDGDQIIYHCTVRTLDGVLVESSRSDYGGEFKMKPQLHYGEDDCPISAPDGFPKEDELHFEIELIEFFKAKARMISAKTVSGKLIMSHSEGEPYLFTFGKSELPKGLEMAIGTMVREEKAVIYVTAQYLTESPLMPVIEDYDEVHFEVELVHFIQVRDMLGDGRLIKRRIQDGKGDFPMDCPLHDSLLRVHYKGTVLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPSNVPEGAHIQWEIELLGFETPKDWTGLDFKTIMNEAENIRNTGNRLFKEGKYELAKAKYEKLLREFNHINPQDDEEGKVFADTRNLLHLNVAACHLKLGECKKSIETCNKVLEANPAHVKGLYRRGMAYMTAGDFEEARADFKMMMKVDKSTESDATAALQKLKQKEQEVDKKARKQFKGLFDKKPGDIAEAKADVDGDQITSESQKDDEVHGDSDGTNSEDSHETPPETPRTSWFSLFWPSGRSLFESLGLNRCTIL | 563 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst4g01380 | 563 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 128 | 198 | IPR001179 | GO:0003755 | |
| Spst4g01380 | 563 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 233 | 321 | IPR001179 | GO:0003755 | |
| Spst4g01380 | 563 | Gene3D | - | 2 | 81 | IPR046357 | GO:0003755 | |
| Spst4g01380 | 563 | Gene3D | - | 204 | 327 | IPR046357 | GO:0003755 | |
| Spst4g01380 | 563 | PANTHER | INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 | 138 | 202 | - | - | |
| Spst4g01380 | 563 | FunFam | Peptidylprolyl isomerase | 329 | 485 | - | - | |
| Spst4g01380 | 563 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 134 | 201 | IPR001179 | GO:0003755 | |
| Spst4g01380 | 563 | SUPERFAMILY | FKBP-like | 27 | 119 | - | - | |
| Spst4g01380 | 563 | ProSiteProfiles | TPR repeat profile. | 424 | 457 | IPR019734 | GO:0005515 | |
| Spst4g01380 | 563 | MobiDBLite | consensus disorder prediction | 497 | 539 | - | - | |
| Spst4g01380 | 563 | SUPERFAMILY | FKBP-like | 125 | 200 | - | - | |
| Spst4g01380 | 563 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 232 | 324 | IPR001179 | GO:0003755 | |
| Spst4g01380 | 563 | SMART | tpr_5 | 390 | 423 | IPR019734 | GO:0005515 | |
| Spst4g01380 | 563 | SMART | tpr_5 | 424 | 457 | IPR019734 | GO:0005515 | |
| Spst4g01380 | 563 | SMART | tpr_5 | 341 | 374 | IPR019734 | GO:0005515 | |
| Spst4g01380 | 563 | SUPERFAMILY | TPR-like | 338 | 480 | IPR011990 | GO:0005515 | |
| Spst4g01380 | 563 | Coils | Coil | 461 | 481 | - | - | |
| Spst4g01380 | 563 | MobiDBLite | consensus disorder prediction | 8 | 32 | - | - | |
| Spst4g01380 | 563 | FunFam | Peptidylprolyl isomerase | 202 | 326 | - | - | |
| Spst4g01380 | 563 | Pfam | Tetratricopeptide repeat | 425 | 448 | IPR019734 | GO:0005515 | |
| Spst4g01380 | 563 | Gene3D | - | 121 | 203 | IPR046357 | GO:0003755 | |
| Spst4g01380 | 563 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Spst4g01380 | 563 | Gene3D | Tetratricopeptide repeat domain | 335 | 489 | IPR011990 | GO:0005515 | |
| Spst4g01380 | 563 | MobiDBLite | consensus disorder prediction | 497 | 533 | - | - | |
| Spst4g01380 | 563 | SUPERFAMILY | FKBP-like | 206 | 330 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst4g01380 | 28 | 489 | Calmodulin-binding Proteins | AT5G48570 | 27.238 | 1.77e-41 | 155 |