Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01360 ATGGACTTGAATGCCTCGCCGGTTCCAGAGGAAGATGAAGATATTTTGGAGGAGAAGATACATGTTCAAGAGTATCATGCGCCTGAAGAACGCATAGAAACTGGAGCTGATATAGCACGCCGGGAGCGTGAAGAAAGAAAGAGACGGTTGAAGAGAGAACGGCCAGATGACAGACCTGTTCATGTGTCACAGTCACCTGGATATGATAAGCTATTTCCTGCTAAGAACCATAAATCATATGATAAAAGTAGGCTTCCTTCAGGATGGTTGGATTGTCCTTCATTTGGCCAGGAAATTTTTTGCATGATACCTTCCAAGGTTCCACTTGGTGAATCTTTCACTGATTGCATTCTTCCGGGTAAAAGATACTCATTTAAACAAGTGATACATCAGCAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTGATTGATTTGACAAATACCTCTCGCTACTATCCTGTGTCAGACTTAAAGAAAGAGTGCATCAAGCATGTTAAGATTCAGTGCAGGGGACGCGATTCTGTACCTGATAATTTAGCTGTGAACCAGTTCGTCTATGAGATTACATCCAATTCTTGTCCTGCAATAAAAATATTTTCTGAAGCTCGTCCTCCTGGTATCTACAAACCTGATTACATTGATGCATTGTACACATTTTATCATGAGAAAAAGCCTGAAATGGTAGTTTGTCCTCCCACTCCTGAGTGGAAGAGGTCTTCAGAATTTGATCTCAATGGTGAAGCTGTTCCAGATGATGATGATGATGGAGTACCTGGCCCTGATTTGCAGGAGAACCATGAGACAGACACCCGAATGACAAATGATGATGTCTTAGGAGATGAGATACCTTCTGATCAGCAAGATGCATTGCGTCAGTTCTGTTATCAAACACTTAAATTGGTTCCCGGGGCTAGGGGACACACACAATTTCCAGCTGAAACTATCCGATATGGAAGAGACCAGTTGGCAGCATATTCATTTGATTTGTGCATTTCTCTCATTGTTCCCCATTCCCCTACCTTCCCCTCCTATTTTAATTGGTTTTCAAAAGTTGTACACATGCCTGCTGTTGAGTTATCTCTGATAACCACTTGTGATTGGGCTGGTTTGGGTGAGAAGACCCACCACTACACATTACTTGATGGTGAAATGGTTATTGATACATTGCCAGATTCACAGAAGCAGGAGAGAAGATATCTTATATATGATATGATGGCAATCAACCAAGTCTCAATAATAGAGCGACCCTTTTATGAAAGATGGAAGATGCTTGAGAAGGAAGTGATTGAACCTAGGAATCACGAACGGCACCATATATATCAGAGCAGAAATCCTTACTATAGATATGATCTGGAACCATTCAGGGTGAGGAGGAAAGATTTCTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAGGAATTCATTAAAAGACTCTCACATGAGGCAGACGGTCTTATATTTCAGGGTTGGGATGATCCTTATATACCACGTACTCATGAAGGACTATTGAAGTGGAAATATGCTTATCTGAATTCGGTTGATTTTCTTTTTGAGGTTGATGGTGATCGTGAGATGCTTTTTCTTTATGAACGGGGAAAAAAGAAACTCTTGGAAGGGAATAGGGTTGAATTCACAGATGGTTCAGATCCCTCAATTTATTCAGGAAAGATCATTGAATGTTCTTGGGATTTTGATAAACTGGAATGGAAGTTTATGCGAATCAGAACAGATAAATCAACTCCTAATGAATTCAATACTTACAGGAAGGTGATGCGAAGCATTAGAGACAACATCACTGAGGAAGATTTGTTGAATGAAATAAGTGAGATTATTCGCCTTCCCATGTATGCTGACAGGATAAGAAATGACAGTAAAGCAACTCAGCATGCTAGTGTCGCAAGGCGAAGGTGA 1911 0.4076 MDLNASPVPEEDEDILEEKIHVQEYHAPEERIETGADIARREREERKRRLKRERPDDRPVHVSQSPGYDKLFPAKNHKSYDKSRLPSGWLDCPSFGQEIFCMIPSKVPLGESFTDCILPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKECIKHVKIQCRGRDSVPDNLAVNQFVYEITSNSCPAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGVPGPDLQENHETDTRMTNDDVLGDEIPSDQQDALRQFCYQTLKLVPGARGHTQFPAETIRYGRDQLAAYSFDLCISLIVPHSPTFPSYFNWFSKVVHMPAVELSLITTCDWAGLGEKTHHYTLLDGEMVIDTLPDSQKQERRYLIYDMMAINQVSIIERPFYERWKMLEKEVIEPRNHERHHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYIPRTHEGLLKWKYAYLNSVDFLFEVDGDREMLFLYERGKKKLLEGNRVEFTDGSDPSIYSGKIIECSWDFDKLEWKFMRIRTDKSTPNEFNTYRKVMRSIRDNITEEDLLNEISEIIRLPMYADRIRNDSKATQHASVARRR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01360 636 Gene3D Protein tyrosine phosphatase superfamily 61 193 IPR029021 -
Spst4g01360 636 Gene3D DNA ligase/mRNA capping enzyme 351 506 - -
Spst4g01360 636 MobiDBLite consensus disorder prediction 244 274 - -
Spst4g01360 636 PIRSF mRNA_capping_HCE 190 323 IPR017074 GO:0004484|GO:0006370|GO:0140818
Spst4g01360 636 PIRSF mRNA_capping_HCE 72 193 IPR017074 GO:0004484|GO:0006370|GO:0140818
Spst4g01360 636 PIRSF mRNA_capping_HCE 355 636 IPR017074 GO:0004484|GO:0006370|GO:0140818
Spst4g01360 636 Gene3D Protein tyrosine phosphatase superfamily 194 256 IPR029021 -
Spst4g01360 636 ProSiteProfiles ATP-dependent DNA ligase family profile. 390 534 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Spst4g01360 636 Pfam mRNA capping enzyme, catalytic domain 371 506 IPR001339 GO:0004484|GO:0005524|GO:0006370
Spst4g01360 636 MobiDBLite consensus disorder prediction 259 274 - -
Spst4g01360 636 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 371 507 - -
Spst4g01360 636 Pfam mRNA capping enzyme, C-terminal domain 511 604 IPR013846 -
Spst4g01360 636 CDD Adenylation_mRNA_capping 372 507 IPR001339 GO:0004484|GO:0005524|GO:0006370
Spst4g01360 636 Gene3D - 541 613 IPR012340 -
Spst4g01360 636 MobiDBLite consensus disorder prediction 21 73 - -
Spst4g01360 636 MobiDBLite consensus disorder prediction 21 60 - -
Spst4g01360 636 FunFam mRNA capping enzyme family protein 505 613 - -
Spst4g01360 636 PANTHER MRNA-CAPPING ENZYME 80 618 - -
Spst4g01360 636 SUPERFAMILY Nucleic acid-binding proteins 510 621 IPR012340 -
Spst4g01360 636 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 85 237 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01360 Spst-Chr4 51049754 51061835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01360 1 636 Protein tyrosine phosphatase (PTP) family AT3G09100 57.039 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01360 K13917 - gmx:100776633 1075.46