Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01335 ATGTTTCCATCCCAAAGCTCCATTCTCATTCCACCACCTCAACCCATGATGTTTCACCCTAACCAAGCTTTTCACCATTTTCAAGACCAGATGATGAATGCACCTACCCACAACCCTCCTTTTGTGATGGAGGGTCCTTCCAACCCCATCACTAACCCCATTTATGGAAATGGAATATCAAACCCTTCTTTGGGTGATGGGTCTTCCCTAAGAGGCTTCGTTAACAGTCACCAACCTGTGATGTTAGCACCAAAGAACAACAACAAAATGGAAGCTTTGTATGACCACCACAAAGGCAAAGTCATATGGGATTTTTCCCAGAAAACCATGGTTCAACCGTTTGAAGCTTCTTCTTCCAAGTCACCATCACCTTTCTGTTTCTCCAATGAATATGGAGTGGGAATGAATGAATTTCACAGGGTCACTGATCAAAGTGTAGAGGTGGAAAAGGCTACCAACAATGTTAATGATAATATAATCAAAGGACAGTGGACTTCCGAAGAAGACAGTGCTCTGGTGGAGTTGGTGAATCAATTTGGACCGAAGAAGTGGTCGCAAATTGCGAAGTTGATGTGCGGCAGAATCGGAAAGCAATGTCGAGAAAGATGGCACAATCATCTCCGACCAAACATTAGGAAGGACTCGTGGACCCTGGAGGAAGACATGATTCTGATAAAAGCCCACCAGGAATTTGGAAACAGGTGGTCAGAGATTGCTAAAAGGCTACCTGGAAGGACTGAAAACACCATCAAGAATCACTGGAATGGAACCAAGCGACGTCAGAGTTACAAGACCTACAACAAGAATAAGACCTCCCCTTACGAAGGATCGATGCTTCGTGCTTATGTTAAAAGGGTCACTGCTACTGAAGAAGCTACAAAAGTGCTCAAGAAACCCATCACTAAAAAGAATAAGAAGGTCTTGAGATCCAACGGGCTAGCACCTTTCTTGATGTACACTCGTTGTACTAATGAAGTGTTCATTGGAAGTAGCAGCAACCACGCCCCGATGCAAGTTAACAGTAACAACGTTGCTGGTTACTATGGTGCCAATGGAAAGGATGCAACCAATAAGGGAATGAATCAGATAAATGCAAAATTTTGA 1104 0.4357 MFPSQSSILIPPPQPMMFHPNQAFHHFQDQMMNAPTHNPPFVMEGPSNPITNPIYGNGISNPSLGDGSSLRGFVNSHQPVMLAPKNNNKMEALYDHHKGKVIWDFSQKTMVQPFEASSSKSPSPFCFSNEYGVGMNEFHRVTDQSVEVEKATNNVNDNIIKGQWTSEEDSALVELVNQFGPKKWSQIAKLMCGRIGKQCRERWHNHLRPNIRKDSWTLEEDMILIKAHQEFGNRWSEIAKRLPGRTENTIKNHWNGTKRRQSYKTYNKNKTSPYEGSMLRAYVKRVTATEEATKVLKKPITKKNKKVLRSNGLAPFLMYTRCTNEVFIGSSSNHAPMQVNSNNVAGYYGANGKDATNKGMNQINAKF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01335 367 ProSiteProfiles Myb-like domain profile. 208 258 IPR001005 -
Spst4g01335 367 Pfam Myb-like DNA-binding domain 164 221 - -
Spst4g01335 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 262 IPR017930 -
Spst4g01335 367 PANTHER MYB PROTEIN-RELATED 130 277 - -
Spst4g01335 367 CDD SANT 215 255 IPR001005 -
Spst4g01335 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 211 IPR017930 -
Spst4g01335 367 SMART sant 160 209 IPR001005 -
Spst4g01335 367 SMART sant 212 260 IPR001005 -
Spst4g01335 367 FunFam Transcriptional activator Myb isoform A 160 213 - -
Spst4g01335 367 CDD SANT 164 207 IPR001005 -
Spst4g01335 367 Gene3D - 215 276 - -
Spst4g01335 367 ProSiteProfiles Myb-like domain profile. 156 207 IPR001005 -
Spst4g01335 367 Gene3D - 160 212 - -
Spst4g01335 367 SUPERFAMILY Homeodomain-like 158 254 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01335 Spst-Chr4 50505012 50509951 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01335 159 286 MYB Transcription Factor Family AT4G18770 59.375 2.76e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g01335 Myb_DNA-bind_6 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01335 K09422 - vra:106773360 477.248