Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01330 ATGTCAAGTCTACAGATGTGTCATGTGGATTTGGAGCAAGGGAGTCACCAGCGTTCTGTGAGTGGCAGTGACATGAGCATGTGCTTTTCTGATGCTGATAATGGTTCATGCTACTCCCATTTCTACTCAACAAATGGTGACCCTTATGATGATTACACCTTTTCTTGTGTTTCTGATGCTGAGGATGGGGGTGCTGCTGATTCCAGGAGGACTTCTTCTGTTACAGATTGTTCAGTAGAACTGGAAATTGAAGGTGGGGTTTCTGAAATTAAGGTGCATTTGGCCAAAGTGGAGAGGGATTGCAGGATTTGTCATCTTGGTTTGGAGAGTGATAGTCAAGAATCTGGAGTTCCCATTGAATTGGGATGTTCTTGTAAGGATGATTTGGGTGCTGCTCACAAGAACTGTGCTGAGGCTTGGTTCAAGATTAAGGGGAATAGGTGA 444 0.4437 MSSLQMCHVDLEQGSHQRSVSGSDMSMCFSDADNGSCYSHFYSTNGDPYDDYTFSCVSDAEDGGAADSRRTSSVTDCSVELEIEGGVSEIKVHLAKVERDCRICHLGLESDSQESGVPIELGCSCKDDLGAAHKNCAEAWFKIKGNR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01330 147 PANTHER ZINC FINGER, RING-CH-TYPE 13 147 - -
Spst4g01330 147 Pfam RING-variant domain 101 144 IPR011016 GO:0008270
Spst4g01330 147 SMART ringv_2 100 147 IPR011016 GO:0008270
Spst4g01330 147 ProSiteProfiles Zinc finger RING-CH-type profile. 93 147 IPR011016 GO:0008270
Spst4g01330 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 147 IPR013083 -
Spst4g01330 147 SUPERFAMILY RING/U-box 98 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01330 Spst-Chr4 50451793 50452236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01330 59 147 C3H Transcription Factor Family AT5G05830 58.427 2.48e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01330 - - gmx:100813946 266.929