Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01328 ATGGAACCGGAAGAAACCGCCGTCACCGCAGTTGACGGAAGCGGCGACGAGGGACTGCTTAGTTTAGAAGGCGGCGATGGCGGCAGGGATAGAGTGAAGGGTCCTTGGTCTCCGGAAGAGGACGCCATTCTGAGTCGCCTCGTGAGCAAGTTCGGGGCCAGAAACTGGAGCCTCATCGCGCGCGGAATCAGCGGAAGATCCGGGAAGTCGTGCCGGCTACGGTGGTGCAACCAGCTCGACCCCTCCGTTAAGCGCAAACCATTCACCGATGAGGAGGACCGCATTATTGTAGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCTATTGCGAGGCTTCTACCCGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCCACTTTGAGGCGTCGGGGAGTTGAACTTGATAAAATTAAATTAGAATCTGGCAACTTCATGGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCCTCGGAAGAGACACTATCATGTGGGGATGTCTCTTTGAAATCCTCAGAAGCGAGAGATGTAAGAGATGTCAGTTCTGTGGAGATCGTGGGTGATAAATATGATGACAAAGCACAAGCTGAGGGTCAATTACACCACGAAGTCAACGATCCACCTACACTTTATCGGCCGGTAGCACGCGTCAGTGCTTTCAATGTATATCACGCATTTGATGGTATACAGCCTTCGGCATCAATTCAAAGACCTGTTTCGATGCAAGGACCCATTCTACAATCATCAAAACCTGATATCGAATTTTGTAGAATGCTTGAGGGAATTTGTGGTGAGCAATCAGTGCCTCTCCAGTGTGGCCATGGTTGCTGTGCTTCTCCAAATGCTAGAAAGTCCGAAAGCTCTTTGTTGGGACCGGAATTCATTGAATTTTCTGAACCCGCATCTTTTCCAAGTTTTGAGTTGGCTGCAATCGCTACAGACATTAGCAACCTTGCTTGGCTTAAAAGTGGATTGGAGAGTAGTAGTGTGAAAATGATGGGAAACACCTCTGGAAGTGTAATGTCTAATGGATCTCAAGTACATATTGGCCATTAG 1062 0.4821 MEPEETAVTAVDGSGDEGLLSLEGGDGGRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNFMEDVSLEKAKASSEETLSCGDVSLKSSEARDVRDVSSVEIVGDKYDDKAQAEGQLHHEVNDPPTLYRPVARVSAFNVYHAFDGIQPSASIQRPVSMQGPILQSSKPDIEFCRMLEGICGEQSVPLQCGHGCCASPNARKSESSLLGPEFIEFSEPASFPSFELAAIATDISNLAWLKSGLESSSVKMMGNTSGSVMSNGSQVHIGH 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01328 353 FunFam MYB transcription factor 33 84 - -
Spst4g01328 353 SUPERFAMILY Homeodomain-like 30 126 IPR009057 -
Spst4g01328 353 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Spst4g01328 353 CDD SANT 35 77 IPR001005 -
Spst4g01328 353 Gene3D - 32 84 - -
Spst4g01328 353 Gene3D - 87 133 - -
Spst4g01328 353 Pfam Myb-like DNA-binding domain 36 93 - -
Spst4g01328 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Spst4g01328 353 FunFam Transcription factor MYB44 87 133 - -
Spst4g01328 353 CDD SANT 87 130 IPR001005 -
Spst4g01328 353 MobiDBLite consensus disorder prediction 1 36 - -
Spst4g01328 353 SMART sant 84 132 IPR001005 -
Spst4g01328 353 SMART sant 32 81 IPR001005 -
Spst4g01328 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 79 IPR017930 -
Spst4g01328 353 PANTHER MYB PROTEIN-RELATED 33 183 - -
Spst4g01328 353 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01328 Spst-Chr4 50440897 50445491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01328 25 353 MYB Transcription Factor Family AT3G09230 51.917 4.32e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g01328 Myb_DNA-bind_6 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01328 K09422 - gmx:100811740 596.66