Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01327 ATGGAACCGGAAGAAACAGCCGTCACCGCAGTTGACGGAAGCGGCGACGAGGGACTGCTTAGTTTAGAGGGCGGGGACGGCGGTGGCGGCAGGGACAGGGTGAAGGGTCCTTGGTCGCCTGAAGAGGACGCCATTCTGAGTCGCCTGGTGAGCAGGTTCGGCGCCAGAAACTGGAGCCTCATCGCGCGCGGGATCAGCGGAAGATCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAATCAGCTCGACCCTTCCGTTAAGCGCAAACCATTCACCGATGAGGAGGACCGCATTATAGTAGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCTATTGCCAGGCTTCTACCCGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCCACTTTGAGGCGTCGGGGAGTTGAACTTGATAAAATTAAATTAGAATCTGGCAACTTCATGGAAGATGTTAACTTGGAGAAAGCAAAAGCATCCTCGGAAGAGACACTATCATGTGGGGATGTCTCTTTGAAATCCTCAGAAGCGAGAGATGTAAGAGATGTCAGTTCTGTGGAGATCGTGGGTGATAAATCTGATGACAAAGCACAAGCTGAGTGTCAATTACACCACGAAGTCAACGGTCCACCTACACTTTTCCGACCAGTAGCGCGCGTCAGTGCTTTCAGTGTATATCACTCATATGATGGTATACAGCCTTCAACATCAACTCAAAGACCTGTTCCGCTGCAAGGACCCATTTTACAATCATCAAAATCTGATATCGAATTTTGTAAAATGCTTGAGGGAATTTGTGGTGACCAATCAGTGCCTCTCCAGTGTGGCCATGGTTGCTGTGCTGCTCCAAATGCGAGAAAGTCCGAAGGCTCTTTGTTGGGACCAGAATTCACTGAATTTTCTGAACCCGCATCTTTTCCAAGTTTTGCGTTGGCTGCAATTGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAGTAGTAGTGTCAAAATGATGGGAAACACCTCTGGAAGTGTAATATCTAATGGATCTCAAGTACATATTGGCCATTAG 1068 0.4869 MEPEETAVTAVDGSGDEGLLSLEGGDGGGGRDRVKGPWSPEEDAILSRLVSRFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNFMEDVNLEKAKASSEETLSCGDVSLKSSEARDVRDVSSVEIVGDKSDDKAQAECQLHHEVNGPPTLFRPVARVSAFSVYHSYDGIQPSTSTQRPVPLQGPILQSSKSDIEFCKMLEGICGDQSVPLQCGHGCCAAPNARKSEGSLLGPEFTEFSEPASFPSFALAAIATDISNLAWLKSGLESSSVKMMGNTSGSVISNGSQVHIGH 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01327 355 SMART sant 34 83 IPR001005 -
Spst4g01327 355 SMART sant 86 134 IPR001005 -
Spst4g01327 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Spst4g01327 355 FunFam MYB transcription factor 35 86 - -
Spst4g01327 355 Gene3D - 34 86 - -
Spst4g01327 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 81 IPR017930 -
Spst4g01327 355 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Spst4g01327 355 CDD SANT 37 79 IPR001005 -
Spst4g01327 355 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Spst4g01327 355 MobiDBLite consensus disorder prediction 1 38 - -
Spst4g01327 355 Gene3D - 89 135 - -
Spst4g01327 355 Pfam Myb-like DNA-binding domain 38 95 - -
Spst4g01327 355 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Spst4g01327 355 PANTHER MYB PROTEIN-RELATED 35 192 - -
Spst4g01327 355 CDD SANT 89 132 IPR001005 -
Spst4g01327 355 FunFam Transcription factor MYB44 89 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01327 Spst-Chr4 50368416 50371793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01327 24 355 MYB Transcription Factor Family AT3G09230 50.000 2.72e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g01327 Myb_DNA-bind_6 5.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01327 K09422 - gmx:100811740 579.326